7U39 Hydrolase date Feb 26, 2022
title Structure Of The Apo Form Of Streptomyces Venezuelae Glgx, T Glycogen Debranching Enzyme
authors M.A.Schumacher
compound source
Molecule: Glycogen Debranching Enzyme Glgx
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
Organism_scientific: Streptomyces Venezuelae
Organism_taxid: 54571
Gene: Glgx, Dej46_08920
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.276
length a length b length c angle alpha angle beta angle gamma
181.496 204.856 195.719 90.00 90.43 90.00
method X-Ray Diffractionresolution 3.51 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2668 Kb) [Save to disk]
  • Biological Unit Coordinates (7u39.pdb1.gz) 452 Kb
  • Biological Unit Coordinates (7u39.pdb2.gz) 453 Kb
  • Biological Unit Coordinates (7u39.pdb3.gz) 453 Kb
  • Biological Unit Coordinates (7u39.pdb4.gz) 455 Kb
  • Biological Unit Coordinates (7u39.pdb5.gz) 456 Kb
  • Biological Unit Coordinates (7u39.pdb6.gz) 458 Kb
  • CSU: Contacts of Structural Units for 7U39
  • Structure Factors (4174 Kb)
  • Retrieve 7U39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7U39 from S2C, [Save to disk]
  • View 7U39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7U39
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7u39_K] [7u39_B] [7u39_I] [7u39_L] [7u39_G] [7u39_F] [7u39_A] [7u39_E] [7u39_C] [7u39_H] [7u39_J] [7u39_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7U39
  • Community annotation for 7U39 at PDBWiki (http://pdbwiki.org)

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