7UPJ	Hydrolase	date	Dec 05, 1996
title	Hiv-1 Proteaseu101935 Complex
authors	K.D.Watenpaugh, M.N.Janakiraman
compound		source
Molecule: Hiv-1 Protease Chain: A, B Synonym: Human Immunodeficiency Virus Type 1 Protease Ec: 3.4.23.16 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Strain: Bh5 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.208 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.374 89.605 47.341 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	INU BindingDB	enzyme	Hydrolase E.C.3.4.23.16 BRENDA
related structures	by homologous chain: 1EC2, 1MRX
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-based design of nonpeptidic HIV protease inhibitors: the sulfonamide-substituted cyclooctylpyramones., Skulnick HI, Johnson PD, Aristoff PA, Morris JK, Lovasz KD, Howe WJ, Watenpaugh KD, Janakiraman MN, Anderson DJ, Reischer RJ, Schwartz TM, Banitt LS, Tomich PK, Lynn JC, Horng MM, Chong KT, Hinshaw RR, Dolak LA, Seest EP, Schwende FJ, Rush BD, Howard GM, Toth LN, Wilkinson KR, Romines KR, et al., J Med Chem 1997 Mar 28;40(7):1149-64. PMID:9089336

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (7upj.pdb1.gz) 34 Kb LPC: Ligand-Protein Contacts for 7UPJ CSU: Contacts of Structural Units for 7UPJ Likely Quarternary Molecular Structure file(s) for 7UPJ Retrieve 7UPJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 7UPJ from S2C, [Save to disk]

View 7UPJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 7UPJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 7UPJ, from MSDmotif at EBI Genome occurence of 7UPJ's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d7upja_, region A [Jmol] [rasmolscript] [script source]     - Domain d7upjb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [7upj_A] [7upj] [7upj_B] SWISS-PROT database: [P03367] Domain organization of [POL_HV1BR] by SWISSPFAM

Other resources with information on 7UPJ

Community annotation for 7UPJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 7UPJ from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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