7WAB Hydrolase date Dec 14, 2021
title Crystal Structure Of The Prolyl Endoprotease, Pep, From Aspe Niger
authors K.Miyazono, K.Kubota, K.Takahashi, M.Tanokura
compound source
Molecule: Compass (Complex Proteins Associated With Set1p) Shg1 Family Protein;
Chain: A
Synonym: Prolyl Endoprotease, Pep
 Organism_scientific: Aspergillus Niger
Organism_taxid: 5061
symmetry Space Group: P 4 21 2
R_factor 0.164 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.517 144.517 56.542 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand BMA, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (7wab.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 7WAB
  • CSU: Contacts of Structural Units for 7WAB
  • Structure Factors (1520 Kb)
  • Retrieve 7WAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7WAB from S2C, [Save to disk]
    • View 7WAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7WAB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7wab_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7WAB
  • Community annotation for 7WAB at PDBWiki (http://pdbwiki.org)

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