7YWZ	Hydrolase	date	Feb 15, 2022
title	Modified Oligopeptidase B From S. Proteomaculans In Intermed Conformation With 4 Spermine Molecules At 1.75 A Resolution
authors	D.E.Petrenko, K.M.Boyko, A.Y.Nikolaeva, A.V.Vlaskina, A.G.Mikhai V.I.Timofeev, T.V.Rakitina
compound		source
Molecule: Oligopeptidase B Chain: A Engineered: Yes		Organism_scientific: Serratia Proteamaculans Organism_taxid: 28151 Gene: Opdb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.172 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.890 100.440 108.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	GOL, SPM	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (7ywz.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 7YWZ CSU: Contacts of Structural Units for 7YWZ Structure Factors (2208 Kb) Retrieve 7YWZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 7YWZ from S2C, [Save to disk]

View 7YWZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 7YWZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [7ywz_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 7YWZ

Community annotation for 7YWZ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---