830C	Matrix Metalloprotease	date	Aug 06, 1998
title	Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based Hydroxa
authors	B.Lovejoy, A.Welch, S.Carr, C.Luong, C.Broka, R.T.Hendricks, J.Cam K.Walker, R.Martin, H.Van Wart, M.F.Browner
compound		source
Molecule: Mmp-13 Chain: A, B Fragment: Catalytic Domain Synonym: Mmp-13 Ec: 3.4.24.- Engineered: Yes Other_details: Catalytic Domain Is Complexed With A Dipheny Sulphone Inhibitor		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: Human Cdna Construct. Cdna Construct Of Procollagenase-3
symmetry	Space Group: C 1 2 1	R_factor 0.208 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.072 36.098 96.368 90.00 131.06 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CA, RS1, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24 BRENDA
related structures	by homologous chain: 1BZS, 1CIZ, 1HY7
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors., Lovejoy B, Welch AR, Carr S, Luong C, Broka C, Hendricks RT, Campbell JA, Walker KA, Martin R, Van Wart H, Browner MF, Nat Struct Biol 1999 Mar;6(3):217-21. PMID:10074939

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (830c.pdb1.gz) 42 Kb Biological Unit Coordinates (830c.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 830C CSU: Contacts of Structural Units for 830C Likely Quarternary Molecular Structure file(s) for 830C Retrieve 830C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 830C from S2C, [Save to disk]

View 830C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 830C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 830C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d830ca_, region A [Jmol] [rasmolscript] [script source]     - Domain d830cb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [830c] [830c_B] [830c_A] SWISS-PROT database: [P45452] Domain organization of [MMP13_HUMAN] by SWISSPFAM Domain found in 830C: [ZnMc ] by SMART

Other resources with information on 830C

Community annotation for 830C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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