8E1U Lyase date Aug 11, 2022
title Propionibacterium Freudenreichii Ppi-Dependent Pepck In Comp Malate
authors M.J.Mcleod, T.Holyoak
compound source
Molecule: Ppi-Dependent Pepck
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
Organism_scientific: Propionibacterium Freudenreichii Subsp Shermanii;
Organism_taxid: 1752
Gene: Pfreudjs001_000139
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 1
R_factor 0.181 R_Free 0.223
length a length b length c angle alpha angle beta angle gamma
134.131 146.952 151.094 82.70 84.00 70.80
method X-Ray Diffractionresolution 2.65 Å
ligand MG, MLT enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2940 Kb) [Save to disk]
  • Biological Unit Coordinates (8e1u.pdb1.gz) 743 Kb
  • Biological Unit Coordinates (8e1u.pdb2.gz) 744 Kb
  • Biological Unit Coordinates (8e1u.pdb3.gz) 747 Kb
  • Biological Unit Coordinates (8e1u.pdb4.gz) 744 Kb
  • LPC: Ligand-Protein Contacts for 8E1U
  • CSU: Contacts of Structural Units for 8E1U
  • Structure Factors (7986 Kb)
  • Retrieve 8E1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8E1U from S2C, [Save to disk]
  • View 8E1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 8E1U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8e1u_F] [8e1u_A] [8e1u_D] [8e1u_C] [8e1u_H] [8e1u_G] [8e1u_B] [8e1u_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 8E1U
  • Community annotation for 8E1U at PDBWiki (http://pdbwiki.org)

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