8CAI Ribosome date Jan 24, 2023
title Streptomycin And Hygromycin B Bound To The 30s Body
authors H.Paternoga, C.Crowe-Mcauliffe, J.Novacek, D.N.Wilson
compound source
Molecule: 16s Rrna
Chain: A
 Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: 30s Ribosomal Protein S2
Chain: B
Synonym: Small Ribosomal Subunit Protein Us2
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us3
Chain: C
Synonym: 30s Ribosomal Protein S3
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us4
Chain: D
Synonym: 30s Ribosomal Protein S4
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us5
Chain: E
Synonym: 30s Ribosomal Protein S5
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Bs6, Non-Modified
Chain: F
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us8
Chain: H
Synonym: 30s Ribosomal Protein S8
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us11
Chain: K
Synonym: 30s Ribosomal Protein S11
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us12
Chain: L
Synonym: 30s Ribosomal Protein S12
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us15
Chain: O
Synonym: 30s Ribosomal Protein S15
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: 30s Ribosomal Protein S16
Chain: P
Synonym: Small Ribosomal Subunit Protein Bs16
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Us17
Chain: Q
Synonym: 30s Ribosomal Protein S17
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Bs18
Chain: R
Synonym: 30s Ribosomal Protein S18
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: 30s Ribosomal Protein S20
Chain: T
Synonym: Small Ribosomal Subunit Protein Bs20
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895

Molecule: Small Ribosomal Subunit Protein Bs21
Chain: U
Synonym: 30s Ribosomal Protein S21
Organism_scientific: Escherichia Coli Bw25113
Organism_taxid: 679895
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.08 Å
ligand 2MG, 4OC, 5I0, 5MC, D2T, G7M, HY0, IAS, K, MA6, MG, PSU, SCM, UR3 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (760 Kb) [Save to disk]
  • Biological Unit Coordinates (8cai.pdb1.gz) 741 Kb
  • LPC: Ligand-Protein Contacts for 8CAI
  • CSU: Contacts of Structural Units for 8CAI
  • Retrieve 8CAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8CAI from S2C, [Save to disk]
    • View 8CAI in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 8CAI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8cai_O] [8cai_U] [8cai_L] [8cai_E] [8cai_T] [8cai_D] [8cai_H] [8cai_R] [8cai_P] [8cai_F] [8cai_C] [8cai_Q] [8cai_B] [8cai_A] [8cai_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 8CAI
  • Community annotation for 8CAI at PDBWiki (http://pdbwiki.org)

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