8PCH Hydrolase date Nov 07, 1997
title Crystal Structure Of Porcine Cathepsin H Determined At 2.1 A Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Defines Cathepsin H Aminopeptidase Function
authors G.Guncar, M.Podobnik, J.Pungercar, B.Strukelj, V.Turk, D.Turk
compound source
Molecule: Cathepsin H
Chain: A
Ec: 3.4.22.16
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Spleen

Molecule: Cathepsin H
Chain: P
Ec: 3.4.22.16

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Spleen
symmetry Space Group: P 21 21 21
R_factor
R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.442 68.730 86.757 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BMA, NAG enzyme Hydrolase E.C.3.4.22.16 BRENDA
related structures by homologous chain: 1NB5
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of porcine cathepsin H determined at 2.1 A resolution: location of the mini-chain C-terminal carboxyl group defines cathepsin H aminopeptidase function., Guncar G, Podobnik M, Pungercar J, Strukelj B, Turk V, Turk D, Structure 1998 Jan 15;6(1):51-61. PMID:9493267
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (8pch.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 8PCH
  • CSU: Contacts of Structural Units for 8PCH
  • Likely Quarternary Molecular Structure file(s) for 8PCH
  • Retrieve 8PCH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8PCH from S2C, [Save to disk]
  • View 8PCH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 8PCH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 8PCH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d8pch.1, region P:,A [Jmol] [rasmolscript] [script source]
  • Fold representative 8pch from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8pch_A] [8pch_P] [8pch]
  • SWISS-PROT database: [O46427]
  • Domain organization of [CATH_PIG] by SWISSPFAM
  • Domain found in 8PCH: [Pept_C1 ] by SMART
  • Other resources with information on 8PCH
  • Community annotation for 8PCH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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