8PSH Dna-Rna Hybrid date Oct 13, 1997
title High Resolution Nmr Structure Of The Stereoregular (All-Rp)- Phosphorothioate-Dnarna Hybrid D (Gpscpsgpstpscpsapsgpsg)R(Ccugacgc), Minimize Structure
authors M.Bachelin, G.Hessler, G.Kurz, J.G.Hacia, P.B.Dervan, H.Kessler
compound source
Molecule: Dna (5'-D(Dgp(Sc)P(Gs)P(Pst)P(Sc)P(As)P(Gs 3');
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Rna (5'-R(Cpcpupgpapcpgpc)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand AS, GS, PST, SC enzyme
Primary referenceStructure of a stereoregular phosphorothioate DNA/RNA duplex., Bachelin M, Hessler G, Kurz G, Hacia JG, Dervan PB, Kessler H, Nat Struct Biol 1998 Apr;5(4):271-6. PMID:9546216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (8psh.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 8PSH
  • CSU: Contacts of Structural Units for 8PSH
  • Original NMR restraints for 8PSH from PDB
  • Retrieve 8PSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8PSH from S2C, [Save to disk]
    • View 8PSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 8PSH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 8PSH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8psh_A] [8psh] [8psh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 8PSH
  • Community annotation for 8PSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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