8TLN Hydrolase(Metalloproteinase) date Sep 01, 1993
title Structural Comparison Suggests That Thermolysin And Related Proteases Undergo Hinge-Bending Motion During Catalysis
authors D.Tronrud, B.W.Matthews
compound source
Molecule: Thermolysin
Chain: E
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.100 94.100 131.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand CA, DMS, LYS, VAL, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
note 8TLN supersedes 3TLN, 1TLN, 2TLN
related structures by homologous chain: 1KJP
Gene
Ontology
ChainFunctionProcessComponent
E


Primary referenceStructural comparison suggests that thermolysin and related neutral proteases undergo hinge-bending motion during catalysis., Holland DR, Tronrud DE, Pley HW, Flaherty KM, Stark W, Jansonius JN, McKay DB, Matthews BW, Biochemistry 1992 Nov 24;31(46):11310-6. PMID:1445869
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (8tln.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 8TLN
  • CSU: Contacts of Structural Units for 8TLN
  • Likely Quarternary Molecular Structure file(s) for 8TLN
  • Structure Factors (252 Kb)
  • Retrieve 8TLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8TLN from S2C, [Save to disk]
  • Re-refined 8tln structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 8TLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 8TLN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 8TLN, from MSDmotif at EBI
  • Genome occurence of 8TLN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d8tlne_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 8tln from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8tln] [8tln_D] [8tln_E]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
  • Other resources with information on 8TLN
  • Community annotation for 8TLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science