9GAF Hydrolase Hydrolase Inhibitor date Jun 15, 1999
title Precursor Of The W11f Mutant Glycosylasparaginase From Flavo Meningosepticum
authors H.C.Guo, Q.Xu
compound source
Molecule: Protein (Glycosylasparaginase)
Chain: A, C
Synonym: Glycoasparaginase,Aspartylglycosylaminase, Aspartylglucosaminidase;
Engineered: Yes
Mutation: Yes
Other_details: An Inhibitor (Free Glycine) Is Bound To Each
Organism_scientific: Elizabethkingia Meningoseptica
Organism_taxid: 238
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pmal Fusion Protein
Other_details: Recombinant Protein
symmetry Space Group: P 1
R_factor 0.196 R_Free 0.239
length a length b length c angle alpha angle beta angle gamma
46.300 52.800 62.400 80.80 90.50 105.10
method X-Ray Diffractionresolution 1.90 Å
ligand GLY enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1P4V, 9GAC
A, C

Primary referenceStructural insights into the mechanism of intramolecular proteolysis., Xu Q, Buckley D, Guan C, Guo HC, Cell 1999 Sep 3;98(5):651-61. PMID:10490104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (9gaf.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 9GAF
  • CSU: Contacts of Structural Units for 9GAF
  • Likely Quarternary Molecular Structure file(s) for 9GAF
  • Retrieve 9GAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 9GAF from S2C, [Save to disk]
  • View 9GAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 9GAF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 9GAF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d9gafa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d9gafc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 9gaf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [9gaf_A] [9gaf] [9gaf_C]
  • SWISS-PROT database: [Q47898]
  • Domain organization of [ASPG_ELIMR] by SWISSPFAM
  • Other resources with information on 9GAF
  • Community annotation for 9GAF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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