9ICM	Transferase Dna	date	Dec 16, 1995
title	Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
authors	H.Pelletier, M.R.Sawaya
compound		source
Molecule: Dna (5'-D(Cpaptpcptpgpt)-3') Chain: T Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Cpapgpaptpg)-3') Chain: P Engineered: Yes		Synthetic: Yes
Molecule: Protein (Dna Polymerase Beta (E.C.2.7.7.7)) Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 178.698 57.867 48.556 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 7ICH, 7ICQ
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity., Pelletier H, Sawaya MR, Wolfle W, Wilson SH, Kraut J, Biochemistry. 1996 Oct 1;35(39):12742-61. PMID:8841118

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (9icm.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 9ICM CSU: Contacts of Structural Units for 9ICM Likely Quarternary Molecular Structure file(s) for 9ICM Structure Factors (99 Kb) Retrieve 9ICM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 9ICM from S2C, [Save to disk] Re-refined 9icm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 9ICM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 9ICM

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 9ICM, from MSDmotif at EBI Genome occurence of 9ICM's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d9icma4, region A:149-335 [Jmol] [rasmolscript] [script source]     - Domain d9icma1, region A:9-91 [Jmol] [rasmolscript] [script source]     - Domain d9icma3, region A:92-148 [Jmol] [rasmolscript] [script source] Fold representative 9icm from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [9icm_P] [9icm] [9icm_T] [9icm_A] SWISS-PROT database: [P06746] Domain organization of [DPOLB_HUMAN] by SWISSPFAM Domains found in 9ICM: [HhH1] [POLXc ] by SMART

Other resources with information on 9ICM

Community annotation for 9ICM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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