PDB Short entry for 1TTT HEADER COMPLEX (ELONGATION FACTOR/TRNA) 16-NOV-95 1TTT TITLE PHE-TRNA, ELONGATION FACTOR EF-TU:GDPNP TERNARY COMPLEX CAVEAT 1TTT CHIRALITY ERROR AT THR232A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFER RIBONUCLEIC ACID (YEAST, PHE); COMPND 3 CHAIN: D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: TERNARY COMPLEX WITH GUANOSINE-5'-(BETA,GAMMA-IMIDO) COMPND 6 TRIPHOSPHATE (GDPNP); COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: OF ELONGATION FACTOR TU (EF-TU); COMPND 9 CHAIN: A, B, C SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 5 ORGANISM_TAXID: 271; SOURCE 6 STRAIN: YT-1; SOURCE 7 ATCC: 25104 KEYWDS PROTEIN SYNTHESIS, EF-TU, TRNA, RIBOSOME, 1EFT, 4TNA, PEPTIDE KEYWDS 2 ELONGATION RIBONUCLEOPROTEIN, COMPLEX (ELONGATION FACTOR-TRNA), KEYWDS 3 COMPLEX (ELONGATION FACTOR-TRNA) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.NISSEN,M.KJELDGAARD,S.THIRUP,G.POLEKHINA,L.RESHETNIKOVA, AUTHOR 2 B.F.C.CLARK,J.NYBORG REVDAT 5 14-FEB-24 1TTT 1 REMARK LINK REVDAT 4 13-JUL-11 1TTT 1 VERSN REVDAT 3 21-APR-09 1TTT 1 LINK REVDAT 2 24-FEB-09 1TTT 1 VERSN REVDAT 1 23-DEC-96 1TTT 0 JRNL AUTH P.NISSEN,M.KJELDGAARD,S.THIRUP,G.POLEKHINA,L.RESHETNIKOVA, JRNL AUTH 2 B.F.CLARK,J.NYBORG JRNL TITL CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF PHE-TRNAPHE, JRNL TITL 2 EF-TU, AND A GTP ANALOG. JRNL REF SCIENCE V. 270 1464 1995 JRNL REFN ISSN 0036-8075 JRNL PMID 7491491 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.NISSEN,L.RESHETNIKOVA,G.SIBOSKA,G.POLEKHINA,S.THIRUP, REMARK 1 AUTH 2 M.KJELDGAARD,B.F.CLARK,J.NYBORG REMARK 1 TITL PURIFICATION AND CRYSTALLIZATION OF THE TERNARY COMPLEX OF REMARK 1 TITL 2 ELONGATION FACTOR TU:GTP AND PHE-TRNA(PHE) REMARK 1 REF FEBS LETT. V. 356 165 1994 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.KJELDGAARD,P.NISSEN,S.THIRUP,J.NYBORG REMARK 1 TITL THE CRYSTAL STRUCTURE OF ELONGATION FACTOR EF-TU FROM REMARK 1 TITL 2 THERMUS AQUATICUS IN THE GTP CONFORMATION REMARK 1 REF STRUCTURE V. 1 35 1993 REMARK 1 REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 76349 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2060 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 76349 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9432 REMARK 3 NUCLEIC ACID ATOMS : 4956 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.010 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 1.630 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 17.300; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.010 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 6.120 ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000176855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 103.41750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.17700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 103.41750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.17700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ASN A 39 CD PRO A 40 1.71 REMARK 500 C ASN C 39 CD PRO C 40 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G E 1 P G E 1 OP3 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G D 1 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 G D 3 O3' - P - OP2 ANGL. DEV. = 9.0 DEGREES REMARK 500 G D 3 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 G D 3 N9 - C1' - C2' ANGL. DEV. = -11.9 DEGREES REMARK 500 G D 3 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 G D 4 O3' - P - O5' ANGL. DEV. = 12.7 DEGREES REMARK 500 A D 5 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 U D 7 O5' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 U D 7 N1 - C1' - C2' ANGL. DEV. = -12.5 DEGREES REMARK 500 U D 7 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 A D 9 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 G D 15 N9 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 G D 15 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 G D 18 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 G D 18 N9 - C1' - C2' ANGL. DEV. = -9.7 DEGREES REMARK 500 G D 18 O4' - C1' - N9 ANGL. DEV. = 11.2 DEGREES REMARK 500 G D 19 O3' - P - OP1 ANGL. DEV. = 8.5 DEGREES REMARK 500 G D 19 O5' - P - OP1 ANGL. DEV. = -11.5 DEGREES REMARK 500 G D 19 N9 - C1' - C2' ANGL. DEV. = -14.3 DEGREES REMARK 500 G D 20 O5' - C5' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 G D 20 N9 - C1' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 A D 21 P - O5' - C5' ANGL. DEV. = -10.6 DEGREES REMARK 500 A D 21 N9 - C1' - C2' ANGL. DEV. = -24.1 DEGREES REMARK 500 A D 21 C3' - C2' - O2' ANGL. DEV. = -22.9 DEGREES REMARK 500 G D 22 C4' - C3' - O3' ANGL. DEV. = 13.6 DEGREES REMARK 500 G D 22 N9 - C1' - C2' ANGL. DEV. = -22.6 DEGREES REMARK 500 G D 22 O4' - C1' - N9 ANGL. DEV. = 23.2 DEGREES REMARK 500 A D 23 N9 - C1' - C2' ANGL. DEV. = 12.6 DEGREES REMARK 500 A D 23 O4' - C1' - N9 ANGL. DEV. = 8.1 DEGREES REMARK 500 G D 24 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 G D 24 N9 - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 C D 25 N1 - C1' - C2' ANGL. DEV. = -10.2 DEGREES REMARK 500 C D 27 O4' - C1' - N1 ANGL. DEV. = 7.7 DEGREES REMARK 500 C D 28 O4' - C1' - N1 ANGL. DEV. = 12.2 DEGREES REMARK 500 G D 30 O5' - C5' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 G D 30 N9 - C1' - C2' ANGL. DEV. = -10.6 DEGREES REMARK 500 G D 30 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 A D 31 N9 - C1' - C2' ANGL. DEV. = -10.8 DEGREES REMARK 500 U D 33 O3' - P - OP1 ANGL. DEV. = -17.2 DEGREES REMARK 500 U D 33 N1 - C1' - C2' ANGL. DEV. = -16.5 DEGREES REMARK 500 U D 33 O4' - C1' - N1 ANGL. DEV. = 16.3 DEGREES REMARK 500 A D 35 O4' - C1' - N9 ANGL. DEV. = -7.3 DEGREES REMARK 500 A D 36 N9 - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 A D 36 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 A D 38 O3' - P - OP1 ANGL. DEV. = 13.7 DEGREES REMARK 500 A D 38 O5' - P - OP1 ANGL. DEV. = -6.1 DEGREES REMARK 500 A D 38 N9 - C1' - C2' ANGL. DEV. = -13.8 DEGREES REMARK 500 U D 41 O4' - C1' - N1 ANGL. DEV. = -9.4 DEGREES REMARK 500 G D 42 O4' - C1' - N9 ANGL. DEV. = -9.6 DEGREES REMARK 500 G D 43 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 289 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 63.56 -104.11 REMARK 500 THR A 8 -4.39 -147.16 REMARK 500 PRO A 40 -85.79 -21.10 REMARK 500 ASN A 41 37.47 -63.71 REMARK 500 ILE A 50 -63.99 -100.79 REMARK 500 ALA A 58 -79.24 -67.38 REMARK 500 PRO A 164 64.84 -64.93 REMARK 500 ASN A 185 106.97 -164.94 REMARK 500 GLU A 194 -83.64 -53.06 REMARK 500 THR A 232 107.22 -53.33 REMARK 500 ALA A 259 149.28 -174.63 REMARK 500 PRO A 260 -79.75 -33.83 REMARK 500 MET A 272 115.74 -161.47 REMARK 500 ALA A 282 118.62 -37.89 REMARK 500 VAL A 286 -168.70 -107.79 REMARK 500 ARG A 291 108.33 -55.34 REMARK 500 THR A 314 -49.78 -145.74 REMARK 500 ARG A 345 -121.70 54.54 REMARK 500 VAL A 368 -154.20 -111.25 REMARK 500 THR A 369 125.30 -175.54 REMARK 500 ALA A 379 98.42 -57.02 REMARK 500 GLU A 381 139.49 -171.41 REMARK 500 LYS A 402 143.34 175.10 REMARK 500 LYS B 2 -78.74 168.91 REMARK 500 GLU B 4 -159.22 -114.22 REMARK 500 THR B 8 -16.13 -151.77 REMARK 500 HIS B 19 161.94 -49.04 REMARK 500 PRO B 40 -79.85 -27.43 REMARK 500 ASN B 41 36.19 -65.08 REMARK 500 ILE B 50 -47.67 -130.19 REMARK 500 ASP B 51 53.38 -93.44 REMARK 500 ALA B 53 -158.08 -70.68 REMARK 500 GLU B 56 -75.05 -71.03 REMARK 500 ALA B 58 -84.21 -55.42 REMARK 500 ARG B 59 3.30 -68.34 REMARK 500 ALA B 97 -6.44 -55.49 REMARK 500 ASN B 185 102.89 -171.61 REMARK 500 GLU B 194 -78.94 -54.32 REMARK 500 PRO B 213 -178.99 -62.71 REMARK 500 ARG B 234 -59.53 -133.02 REMARK 500 ARG B 291 104.85 -50.41 REMARK 500 HIS B 331 34.96 -143.18 REMARK 500 ARG B 345 -120.44 47.80 REMARK 500 VAL B 359 115.71 -163.41 REMARK 500 LYS C 2 -92.09 -126.38 REMARK 500 PHE C 5 110.90 51.78 REMARK 500 ARG C 7 46.00 -65.22 REMARK 500 HIS C 19 152.53 -32.34 REMARK 500 ASP C 21 -11.37 70.02 REMARK 500 HIS C 22 -1.82 -54.09 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 A NON-VERIFIED MG 2+ ION WAS INCLUDED IN ALL THREE TRNA REMARK 600 MOLECULES. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 ASP A 51 OD2 91.7 REMARK 620 3 THR A 62 OG1 76.6 70.6 REMARK 620 4 GNP A 406 O2B 75.1 163.1 115.3 REMARK 620 5 GNP A 406 O1A 102.6 101.6 172.0 71.7 REMARK 620 6 GNP A 406 O3G 110.4 128.5 70.4 67.3 116.9 REMARK 620 7 HOH A 410 O 56.3 125.1 59.9 55.9 126.4 54.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 25 OG1 REMARK 620 2 ASP B 51 OD2 87.7 REMARK 620 3 THR B 62 OG1 84.9 63.1 REMARK 620 4 GNP B 406 O2B 86.8 156.6 138.7 REMARK 620 5 GNP B 406 O3G 119.8 133.5 81.5 68.0 REMARK 620 6 HOH B 409 O 61.5 128.3 73.0 67.6 58.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 25 OG1 REMARK 620 2 ASP C 51 OD2 112.8 REMARK 620 3 THR C 62 OG1 69.8 79.7 REMARK 620 4 GNP C 406 O2B 67.2 161.5 115.9 REMARK 620 5 GNP C 406 O1A 106.4 107.9 172.5 56.7 REMARK 620 6 GNP C 406 O1G 127.2 104.6 82.3 88.0 95.5 REMARK 620 7 GNP C 406 O3G 77.7 144.2 72.1 54.2 100.9 50.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHE D 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHE E 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHE F 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP C 406 DBREF 1TTT A 1 405 UNP Q01698 EFTU_THEAQ 1 405 DBREF 1TTT B 1 405 UNP Q01698 EFTU_THEAQ 1 405 DBREF 1TTT C 1 405 UNP Q01698 EFTU_THEAQ 1 405 DBREF 1TTT D 1 76 PDB 1TTT 1TTT 1 76 DBREF 1TTT E 1 76 PDB 1TTT 1TTT 1 76 DBREF 1TTT F 1 76 PDB 1TTT 1TTT 1 76 SEQRES 1 D 76 G C G G A U U U A 2MG C U C SEQRES 2 D 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 D 76 C C A G A OMC U OMG A A YYG A PSU SEQRES 4 D 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 D 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 D 76 A A U U C G C A C C A SEQRES 1 E 76 G C G G A U U U A 2MG C U C SEQRES 2 E 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 E 76 C C A G A OMC U OMG A A YYG A PSU SEQRES 4 E 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 E 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 E 76 A A U U C G C A C C A SEQRES 1 F 76 G C G G A U U U A 2MG C U C SEQRES 2 F 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 F 76 C C A G A OMC U OMG A A YYG A PSU SEQRES 4 F 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 F 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 F 76 A A U U C G C A C C A SEQRES 1 A 405 ALA LYS GLY GLU PHE ILE ARG THR LYS PRO HIS VAL ASN SEQRES 2 A 405 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 A 405 LEU THR ALA ALA LEU THR TYR VAL ALA ALA ALA GLU ASN SEQRES 4 A 405 PRO ASN VAL GLU VAL LYS ASP TYR GLY ASP ILE ASP LYS SEQRES 5 A 405 ALA PRO GLU GLU ARG ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 A 405 ALA HIS VAL GLU TYR GLU THR ALA LYS ARG HIS TYR SER SEQRES 7 A 405 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR ILE LYS ASN SEQRES 8 A 405 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 A 405 VAL VAL SER ALA ALA ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 A 405 GLU HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL PRO TYR SEQRES 11 A 405 ILE VAL VAL PHE MET ASN LYS VAL ASP MET VAL ASP ASP SEQRES 12 A 405 PRO GLU LEU LEU ASP LEU VAL GLU MET GLU VAL ARG ASP SEQRES 13 A 405 LEU LEU ASN GLN TYR GLU PHE PRO GLY ASP GLU VAL PRO SEQRES 14 A 405 VAL ILE ARG GLY SER ALA LEU LEU ALA LEU GLU GLU MET SEQRES 15 A 405 HIS LYS ASN PRO LYS THR LYS ARG GLY GLU ASN GLU TRP SEQRES 16 A 405 VAL ASP LYS ILE TRP GLU LEU LEU ASP ALA ILE ASP GLU SEQRES 17 A 405 TYR ILE PRO THR PRO VAL ARG ASP VAL ASP LYS PRO PHE SEQRES 18 A 405 LEU MET PRO VAL GLU ASP VAL PHE THR ILE THR GLY ARG SEQRES 19 A 405 GLY THR VAL ALA THR GLY ARG ILE GLU ARG GLY LYS VAL SEQRES 20 A 405 LYS VAL GLY ASP GLU VAL GLU ILE VAL GLY LEU ALA PRO SEQRES 21 A 405 GLU THR ARG LYS THR VAL VAL THR GLY VAL GLU MET HIS SEQRES 22 A 405 ARG LYS THR LEU GLN GLU GLY ILE ALA GLY ASP ASN VAL SEQRES 23 A 405 GLY LEU LEU LEU ARG GLY VAL SER ARG GLU GLU VAL GLU SEQRES 24 A 405 ARG GLY GLN VAL LEU ALA LYS PRO GLY SER ILE THR PRO SEQRES 25 A 405 HIS THR LYS PHE GLU ALA SER VAL TYR ILE LEU LYS LYS SEQRES 26 A 405 GLU GLU GLY GLY ARG HIS THR GLY PHE PHE THR GLY TYR SEQRES 27 A 405 ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 28 A 405 VAL VAL ARG LEU PRO GLN GLY VAL GLU MET VAL MET PRO SEQRES 29 A 405 GLY ASP ASN VAL THR PHE THR VAL GLU LEU ILE LYS PRO SEQRES 30 A 405 VAL ALA LEU GLU GLU GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 31 A 405 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL THR LYS ILE SEQRES 32 A 405 LEU GLU SEQRES 1 B 405 ALA LYS GLY GLU PHE ILE ARG THR LYS PRO HIS VAL ASN SEQRES 2 B 405 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 B 405 LEU THR ALA ALA LEU THR TYR VAL ALA ALA ALA GLU ASN SEQRES 4 B 405 PRO ASN VAL GLU VAL LYS ASP TYR GLY ASP ILE ASP LYS SEQRES 5 B 405 ALA PRO GLU GLU ARG ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 B 405 ALA HIS VAL GLU TYR GLU THR ALA LYS ARG HIS TYR SER SEQRES 7 B 405 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR ILE LYS ASN SEQRES 8 B 405 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 B 405 VAL VAL SER ALA ALA ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 B 405 GLU HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL PRO TYR SEQRES 11 B 405 ILE VAL VAL PHE MET ASN LYS VAL ASP MET VAL ASP ASP SEQRES 12 B 405 PRO GLU LEU LEU ASP LEU VAL GLU MET GLU VAL ARG ASP SEQRES 13 B 405 LEU LEU ASN GLN TYR GLU PHE PRO GLY ASP GLU VAL PRO SEQRES 14 B 405 VAL ILE ARG GLY SER ALA LEU LEU ALA LEU GLU GLU MET SEQRES 15 B 405 HIS LYS ASN PRO LYS THR LYS ARG GLY GLU ASN GLU TRP SEQRES 16 B 405 VAL ASP LYS ILE TRP GLU LEU LEU ASP ALA ILE ASP GLU SEQRES 17 B 405 TYR ILE PRO THR PRO VAL ARG ASP VAL ASP LYS PRO PHE SEQRES 18 B 405 LEU MET PRO VAL GLU ASP VAL PHE THR ILE THR GLY ARG SEQRES 19 B 405 GLY THR VAL ALA THR GLY ARG ILE GLU ARG GLY LYS VAL SEQRES 20 B 405 LYS VAL GLY ASP GLU VAL GLU ILE VAL GLY LEU ALA PRO SEQRES 21 B 405 GLU THR ARG LYS THR VAL VAL THR GLY VAL GLU MET HIS SEQRES 22 B 405 ARG LYS THR LEU GLN GLU GLY ILE ALA GLY ASP ASN VAL SEQRES 23 B 405 GLY LEU LEU LEU ARG GLY VAL SER ARG GLU GLU VAL GLU SEQRES 24 B 405 ARG GLY GLN VAL LEU ALA LYS PRO GLY SER ILE THR PRO SEQRES 25 B 405 HIS THR LYS PHE GLU ALA SER VAL TYR ILE LEU LYS LYS SEQRES 26 B 405 GLU GLU GLY GLY ARG HIS THR GLY PHE PHE THR GLY TYR SEQRES 27 B 405 ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 28 B 405 VAL VAL ARG LEU PRO GLN GLY VAL GLU MET VAL MET PRO SEQRES 29 B 405 GLY ASP ASN VAL THR PHE THR VAL GLU LEU ILE LYS PRO SEQRES 30 B 405 VAL ALA LEU GLU GLU GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 31 B 405 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL THR LYS ILE SEQRES 32 B 405 LEU GLU SEQRES 1 C 405 ALA LYS GLY GLU PHE ILE ARG THR LYS PRO HIS VAL ASN SEQRES 2 C 405 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 C 405 LEU THR ALA ALA LEU THR TYR VAL ALA ALA ALA GLU ASN SEQRES 4 C 405 PRO ASN VAL GLU VAL LYS ASP TYR GLY ASP ILE ASP LYS SEQRES 5 C 405 ALA PRO GLU GLU ARG ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 C 405 ALA HIS VAL GLU TYR GLU THR ALA LYS ARG HIS TYR SER SEQRES 7 C 405 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR ILE LYS ASN SEQRES 8 C 405 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 C 405 VAL VAL SER ALA ALA ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 C 405 GLU HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL PRO TYR SEQRES 11 C 405 ILE VAL VAL PHE MET ASN LYS VAL ASP MET VAL ASP ASP SEQRES 12 C 405 PRO GLU LEU LEU ASP LEU VAL GLU MET GLU VAL ARG ASP SEQRES 13 C 405 LEU LEU ASN GLN TYR GLU PHE PRO GLY ASP GLU VAL PRO SEQRES 14 C 405 VAL ILE ARG GLY SER ALA LEU LEU ALA LEU GLU GLU MET SEQRES 15 C 405 HIS LYS ASN PRO LYS THR LYS ARG GLY GLU ASN GLU TRP SEQRES 16 C 405 VAL ASP LYS ILE TRP GLU LEU LEU ASP ALA ILE ASP GLU SEQRES 17 C 405 TYR ILE PRO THR PRO VAL ARG ASP VAL ASP LYS PRO PHE SEQRES 18 C 405 LEU MET PRO VAL GLU ASP VAL PHE THR ILE THR GLY ARG SEQRES 19 C 405 GLY THR VAL ALA THR GLY ARG ILE GLU ARG GLY LYS VAL SEQRES 20 C 405 LYS VAL GLY ASP GLU VAL GLU ILE VAL GLY LEU ALA PRO SEQRES 21 C 405 GLU THR ARG LYS THR VAL VAL THR GLY VAL GLU MET HIS SEQRES 22 C 405 ARG LYS THR LEU GLN GLU GLY ILE ALA GLY ASP ASN VAL SEQRES 23 C 405 GLY LEU LEU LEU ARG GLY VAL SER ARG GLU GLU VAL GLU SEQRES 24 C 405 ARG GLY GLN VAL LEU ALA LYS PRO GLY SER ILE THR PRO SEQRES 25 C 405 HIS THR LYS PHE GLU ALA SER VAL TYR ILE LEU LYS LYS SEQRES 26 C 405 GLU GLU GLY GLY ARG HIS THR GLY PHE PHE THR GLY TYR SEQRES 27 C 405 ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 28 C 405 VAL VAL ARG LEU PRO GLN GLY VAL GLU MET VAL MET PRO SEQRES 29 C 405 GLY ASP ASN VAL THR PHE THR VAL GLU LEU ILE LYS PRO SEQRES 30 C 405 VAL ALA LEU GLU GLU GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 31 C 405 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL THR LYS ILE SEQRES 32 C 405 LEU GLU MODRES 1TTT 2MG D 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT H2U D 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TTT H2U D 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TTT M2G D 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT OMC D 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT OMG D 34 G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT YYG D 37 G MODRES 1TTT PSU D 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TTT 5MC D 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT 7MG D 46 G MODRES 1TTT 5MC D 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT 5MU D 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1TTT PSU D 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TTT 1MA D 58 A MODRES 1TTT 2MG E 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT H2U E 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TTT H2U E 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TTT M2G E 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT OMC E 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT OMG E 34 G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT YYG E 37 G MODRES 1TTT PSU E 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TTT 5MC E 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT 7MG E 46 G MODRES 1TTT 5MC E 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT 5MU E 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1TTT PSU E 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TTT 1MA E 58 A MODRES 1TTT 2MG F 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT H2U F 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TTT H2U F 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TTT M2G F 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT OMC F 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT OMG F 34 G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TTT YYG F 37 G MODRES 1TTT PSU F 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TTT 5MC F 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT 7MG F 46 G MODRES 1TTT 5MC F 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TTT 5MU F 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1TTT PSU F 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TTT 1MA F 58 A HET 2MG D 10 24 HET H2U D 16 20 HET H2U D 17 20 HET M2G D 26 25 HET OMC D 32 21 HET OMG D 34 24 HET YYG D 37 39 HET PSU D 39 20 HET 5MC D 40 21 HET 7MG D 46 24 HET 5MC D 49 21 HET 5MU D 54 21 HET PSU D 55 20 HET 1MA D 58 23 HET 2MG E 10 24 HET H2U E 16 20 HET H2U E 17 20 HET M2G E 26 25 HET OMC E 32 21 HET OMG E 34 24 HET YYG E 37 39 HET PSU E 39 20 HET 5MC E 40 21 HET 7MG E 46 24 HET 5MC E 49 21 HET 5MU E 54 21 HET PSU E 55 20 HET 1MA E 58 23 HET 2MG F 10 24 HET H2U F 16 20 HET H2U F 17 20 HET M2G F 26 25 HET OMC F 32 21 HET OMG F 34 24 HET YYG F 37 39 HET PSU F 39 20 HET 5MC F 40 21 HET 7MG F 46 24 HET 5MC F 49 21 HET 5MU F 54 21 HET PSU F 55 20 HET 1MA F 58 23 HET MG D 78 1 HET PHE D 77 11 HET MG E 78 1 HET PHE E 77 11 HET MG F 78 1 HET PHE F 77 11 HET MG A 407 1 HET GNP A 406 32 HET MG B 407 1 HET GNP B 406 32 HET MG C 407 1 HET GNP C 406 32 HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM YYG 4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4, HETNAM 2 YYG 8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO- HETNAM 3 YYG BUTYRIC ACID METHYL ESTER HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PHE PHENYLALANINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETSYN YYG MODIFIED GUANOSINE-5'-PHOSPHATE FORMUL 1 2MG 3(C11 H16 N5 O8 P) FORMUL 1 H2U 6(C9 H15 N2 O9 P) FORMUL 1 M2G 3(C12 H18 N5 O8 P) FORMUL 1 OMC 3(C10 H16 N3 O8 P) FORMUL 1 OMG 3(C11 H16 N5 O8 P) FORMUL 1 YYG 3(C21 H29 N6 O12 P) FORMUL 1 PSU 6(C9 H13 N2 O9 P) FORMUL 1 5MC 6(C10 H16 N3 O8 P) FORMUL 1 7MG 3(C11 H18 N5 O8 P) FORMUL 1 5MU 3(C10 H15 N2 O9 P) FORMUL 1 1MA 3(C11 H16 N5 O7 P) FORMUL 7 MG 6(MG 2+) FORMUL 8 PHE 3(C9 H11 N O2) FORMUL 14 GNP 3(C10 H17 N6 O13 P3) FORMUL 19 HOH *50(H2 O) HELIX 1 1 LYS A 24 GLU A 38 1 15 HELIX 2 2 TYR A 47 ILE A 50 1 4 HELIX 3 3 PRO A 54 ALA A 58 1 5 HELIX 4 4 ALA A 86 GLN A 98 5 13 HELIX 5 5 PRO A 114 GLN A 125 1 12 HELIX 6 6 VAL A 138 MET A 140 5 3 HELIX 7 7 PRO A 144 GLN A 160 1 17 HELIX 8 8 ALA A 175 ASN A 185 1 11 HELIX 9 9 GLU A 194 GLU A 208 1 15 HELIX 10 10 ARG A 295 GLU A 297 5 3 HELIX 11 11 LYS A 325 GLU A 327 5 3 HELIX 12 12 LYS B 24 GLU B 38 1 15 HELIX 13 13 TYR B 47 ASP B 49 5 3 HELIX 14 14 PRO B 54 ARG B 59 1 6 HELIX 15 15 ALA B 86 GLN B 98 5 13 HELIX 16 16 PRO B 114 GLN B 125 1 12 HELIX 17 17 PRO B 144 TYR B 161 1 18 HELIX 18 18 ALA B 175 LYS B 184 1 10 HELIX 19 19 GLU B 194 GLU B 208 1 15 HELIX 20 20 ARG B 295 GLU B 297 5 3 HELIX 21 21 LYS B 325 GLU B 327 5 3 HELIX 22 22 LYS C 24 GLU C 38 1 15 HELIX 23 23 TYR C 47 ILE C 50 1 4 HELIX 24 24 PRO C 54 ARG C 59 1 6 HELIX 25 25 ALA C 86 GLN C 98 5 13 HELIX 26 26 PRO C 114 GLN C 125 1 12 HELIX 27 27 VAL C 138 MET C 140 5 3 HELIX 28 28 PRO C 144 TYR C 161 1 18 HELIX 29 29 ALA C 175 ASN C 185 1 11 HELIX 30 30 GLU C 194 TYR C 209 1 16 HELIX 31 31 ARG C 295 GLU C 297 5 3 HELIX 32 32 LYS C 325 GLU C 327 5 3 SHEET 1 A 3 PRO A 10 THR A 16 0 SHEET 2 A 3 ARG A 75 ASP A 81 1 N HIS A 76 O PRO A 10 SHEET 3 A 3 ALA A 66 GLU A 71 -1 N TYR A 70 O TYR A 77 SHEET 1 B 3 ALA A 102 SER A 107 0 SHEET 2 B 3 ILE A 131 ASN A 136 1 N VAL A 132 O ALA A 102 SHEET 3 B 3 VAL A 170 ARG A 172 1 N ILE A 171 O VAL A 133 SHEET 1 C 7 ARG A 263 VAL A 266 0 SHEET 2 C 7 GLU A 252 VAL A 256 -1 N ILE A 255 O ARG A 263 SHEET 3 C 7 VAL A 303 ALA A 305 -1 N ALA A 305 O GLU A 254 SHEET 4 C 7 LEU A 222 VAL A 225 -1 N MET A 223 O LEU A 304 SHEET 5 C 7 THR A 236 ARG A 244 -1 N ARG A 244 O LEU A 222 SHEET 6 C 7 ASN A 285 LEU A 290 -1 N LEU A 290 O THR A 236 SHEET 7 C 7 VAL A 267 GLU A 271 -1 N GLU A 271 O GLY A 287 SHEET 1 D 2 ASP A 227 ILE A 231 0 SHEET 2 D 2 GLY A 235 THR A 239 -1 N THR A 239 O ASP A 227 SHEET 1 E 2 LYS A 246 LYS A 248 0 SHEET 2 E 2 GLU A 279 ILE A 281 -1 N GLY A 280 O VAL A 247 SHEET 1 F 7 LYS A 315 TYR A 321 0 SHEET 2 F 7 ASN A 367 LEU A 374 -1 N VAL A 372 O PHE A 316 SHEET 3 F 7 THR A 347 LEU A 355 -1 N ARG A 354 O THR A 371 SHEET 4 F 7 ARG A 339 PHE A 344 -1 N PHE A 344 O THR A 347 SHEET 5 F 7 ARG A 385 GLU A 390 -1 N ARG A 389 O GLN A 341 SHEET 6 F 7 ARG A 393 ILE A 403 -1 N GLY A 398 O PHE A 386 SHEET 7 F 7 PHE A 316 ILE A 322 -1 N TYR A 321 O ALA A 397 SHEET 1 G 3 PRO B 10 THR B 16 0 SHEET 2 G 3 ARG B 75 ASP B 81 1 N HIS B 76 O PRO B 10 SHEET 3 G 3 ALA B 66 GLU B 71 -1 N TYR B 70 O TYR B 77 SHEET 1 H 3 ALA B 102 SER B 107 0 SHEET 2 H 3 ILE B 131 ASN B 136 1 N VAL B 132 O ALA B 102 SHEET 3 H 3 VAL B 170 ARG B 172 1 N ILE B 171 O VAL B 133 SHEET 1 I 7 ARG B 263 VAL B 266 0 SHEET 2 I 7 GLU B 252 VAL B 256 -1 N ILE B 255 O ARG B 263 SHEET 3 I 7 VAL B 303 ALA B 305 -1 N ALA B 305 O GLU B 254 SHEET 4 I 7 LEU B 222 VAL B 225 -1 N MET B 223 O LEU B 304 SHEET 5 I 7 VAL B 237 ARG B 244 -1 N ARG B 244 O LEU B 222 SHEET 6 I 7 ASN B 285 LEU B 290 -1 N LEU B 288 O ALA B 238 SHEET 7 I 7 VAL B 267 GLU B 271 -1 N GLU B 271 O GLY B 287 SHEET 1 J 2 ASP B 227 ILE B 231 0 SHEET 2 J 2 GLY B 235 THR B 239 -1 N THR B 239 O ASP B 227 SHEET 1 K 2 LYS B 246 LYS B 248 0 SHEET 2 K 2 GLU B 279 ILE B 281 -1 N GLY B 280 O VAL B 247 SHEET 1 L 7 GLY B 351 LEU B 355 0 SHEET 2 L 7 PHE B 370 LEU B 374 -1 N GLU B 373 O VAL B 352 SHEET 3 L 7 LYS B 315 ILE B 322 -1 N ALA B 318 O PHE B 370 SHEET 4 L 7 ARG B 393 ILE B 403 -1 N LYS B 402 O GLU B 317 SHEET 5 L 7 ARG B 385 GLU B 390 -1 N GLU B 390 O ARG B 393 SHEET 6 L 7 GLN B 341 PHE B 344 -1 N TYR B 343 O ALA B 387 SHEET 7 L 7 THR B 347 THR B 350 -1 N VAL B 349 O PHE B 342 SHEET 1 M 6 VAL C 170 ARG C 172 0 SHEET 2 M 6 ILE C 131 ASN C 136 1 N VAL C 133 O ILE C 171 SHEET 3 M 6 GLY C 101 SER C 107 1 N ALA C 102 O VAL C 132 SHEET 4 M 6 PRO C 10 ILE C 17 1 N GLY C 15 O GLY C 101 SHEET 5 M 6 ARG C 75 ASP C 81 1 N HIS C 76 O PRO C 10 SHEET 6 M 6 ALA C 66 GLU C 71 -1 N TYR C 70 O TYR C 77 SHEET 1 N 6 ARG C 263 VAL C 266 0 SHEET 2 N 6 GLU C 252 VAL C 256 -1 N ILE C 255 O ARG C 263 SHEET 3 N 6 VAL C 303 LYS C 306 -1 N ALA C 305 O GLU C 254 SHEET 4 N 6 LEU C 222 VAL C 225 -1 N MET C 223 O LEU C 304 SHEET 5 N 6 THR C 236 ARG C 244 -1 N ARG C 244 O LEU C 222 SHEET 6 N 6 ASN C 285 LEU C 290 -1 N LEU C 290 O THR C 236 SHEET 1 O 2 ASP C 227 ILE C 231 0 SHEET 2 O 2 GLY C 235 THR C 239 -1 N THR C 239 O ASP C 227 SHEET 1 P 2 LYS C 246 LYS C 248 0 SHEET 2 P 2 GLU C 279 ILE C 281 -1 N GLY C 280 O VAL C 247 SHEET 1 Q 7 GLY C 351 LEU C 355 0 SHEET 2 Q 7 ASN C 367 LEU C 374 -1 N GLU C 373 O VAL C 352 SHEET 3 Q 7 LYS C 315 ILE C 322 -1 N VAL C 320 O VAL C 368 SHEET 4 Q 7 ARG C 393 ILE C 403 -1 N LYS C 402 O GLU C 317 SHEET 5 Q 7 ARG C 385 GLU C 390 -1 N GLU C 390 O ARG C 393 SHEET 6 Q 7 GLN C 341 PHE C 344 -1 N TYR C 343 O ALA C 387 SHEET 7 Q 7 THR C 347 THR C 350 -1 N VAL C 349 O PHE C 342 LINK O3' A D 9 P 2MG D 10 1555 1555 1.61 LINK O3' 2MG D 10 P C D 11 1555 1555 1.61 LINK O3' G D 15 P H2U D 16 1555 1555 1.61 LINK O3' H2U D 16 P H2U D 17 1555 1555 1.60 LINK O3' H2U D 17 P G D 18 1555 1555 1.60 LINK O3' C D 25 P M2G D 26 1555 1555 1.60 LINK O3' M2G D 26 P C D 27 1555 1555 1.60 LINK O3' A D 31 P OMC D 32 1555 1555 1.60 LINK O3' OMC D 32 P U D 33 1555 1555 1.58 LINK O3' U D 33 P OMG D 34 1555 1555 1.60 LINK O3' OMG D 34 P A D 35 1555 1555 1.60 LINK O3' A D 36 P YYG D 37 1555 1555 1.60 LINK O3' YYG D 37 P A D 38 1555 1555 1.59 LINK O3' A D 38 P PSU D 39 1555 1555 1.59 LINK O3' PSU D 39 P 5MC D 40 1555 1555 1.61 LINK O3' 5MC D 40 P U D 41 1555 1555 1.61 LINK O3' G D 45 P 7MG D 46 1555 1555 1.60 LINK O3' 7MG D 46 P U D 47 1555 1555 1.61 LINK O3' C D 48 P 5MC D 49 1555 1555 1.61 LINK O3' 5MC D 49 P U D 50 1555 1555 1.60 LINK O3' G D 53 P 5MU D 54 1555 1555 1.59 LINK O3' 5MU D 54 P PSU D 55 1555 1555 1.62 LINK O3' PSU D 55 P C D 56 1555 1555 1.62 LINK O3' G D 57 P 1MA D 58 1555 1555 1.59 LINK O3' 1MA D 58 P U D 59 1555 1555 1.61 LINK O3' A D 76 C PHE D 77 1555 1555 1.33 LINK O3' A E 9 P 2MG E 10 1555 1555 1.60 LINK O3' 2MG E 10 P C E 11 1555 1555 1.61 LINK O3' G E 15 P H2U E 16 1555 1555 1.59 LINK O3' H2U E 16 P H2U E 17 1555 1555 1.61 LINK O3' H2U E 17 P G E 18 1555 1555 1.60 LINK O3' C E 25 P M2G E 26 1555 1555 1.62 LINK O3' M2G E 26 P C E 27 1555 1555 1.60 LINK O3' A E 31 P OMC E 32 1555 1555 1.61 LINK O3' OMC E 32 P U E 33 1555 1555 1.59 LINK O3' U E 33 P OMG E 34 1555 1555 1.61 LINK O3' OMG E 34 P A E 35 1555 1555 1.60 LINK O3' A E 36 P YYG E 37 1555 1555 1.60 LINK O3' YYG E 37 P A E 38 1555 1555 1.61 LINK O3' A E 38 P PSU E 39 1555 1555 1.60 LINK O3' PSU E 39 P 5MC E 40 1555 1555 1.61 LINK O3' 5MC E 40 P U E 41 1555 1555 1.60 LINK O3' G E 45 P 7MG E 46 1555 1555 1.61 LINK O3' 7MG E 46 P U E 47 1555 1555 1.61 LINK O3' C E 48 P 5MC E 49 1555 1555 1.62 LINK O3' 5MC E 49 P U E 50 1555 1555 1.60 LINK O3' G E 53 P 5MU E 54 1555 1555 1.58 LINK O3' 5MU E 54 P PSU E 55 1555 1555 1.60 LINK O3' PSU E 55 P C E 56 1555 1555 1.59 LINK O3' G E 57 P 1MA E 58 1555 1555 1.61 LINK O3' 1MA E 58 P U E 59 1555 1555 1.61 LINK O3' A E 76 C PHE E 77 1555 1555 1.40 LINK O3' A F 9 P 2MG F 10 1555 1555 1.61 LINK O3' 2MG F 10 P C F 11 1555 1555 1.61 LINK O3' G F 15 P H2U F 16 1555 1555 1.60 LINK O3' H2U F 16 P H2U F 17 1555 1555 1.62 LINK O3' H2U F 17 P G F 18 1555 1555 1.61 LINK O3' C F 25 P M2G F 26 1555 1555 1.60 LINK O3' M2G F 26 P C F 27 1555 1555 1.60 LINK O3' A F 31 P OMC F 32 1555 1555 1.60 LINK O3' OMC F 32 P U F 33 1555 1555 1.60 LINK O3' U F 33 P OMG F 34 1555 1555 1.59 LINK O3' OMG F 34 P A F 35 1555 1555 1.59 LINK O3' A F 36 P YYG F 37 1555 1555 1.61 LINK O3' YYG F 37 P A F 38 1555 1555 1.62 LINK O3' A F 38 P PSU F 39 1555 1555 1.59 LINK O3' PSU F 39 P 5MC F 40 1555 1555 1.59 LINK O3' 5MC F 40 P U F 41 1555 1555 1.60 LINK O3' G F 45 P 7MG F 46 1555 1555 1.61 LINK O3' 7MG F 46 P U F 47 1555 1555 1.62 LINK O3' C F 48 P 5MC F 49 1555 1555 1.62 LINK O3' 5MC F 49 P U F 50 1555 1555 1.62 LINK O3' G F 53 P 5MU F 54 1555 1555 1.60 LINK O3' 5MU F 54 P PSU F 55 1555 1555 1.61 LINK O3' PSU F 55 P C F 56 1555 1555 1.62 LINK O3' G F 57 P 1MA F 58 1555 1555 1.61 LINK O3' 1MA F 58 P U F 59 1555 1555 1.61 LINK O3' A F 76 C PHE F 77 1555 1555 1.38 LINK OG1 THR A 25 MG MG A 407 1555 1555 2.51 LINK OD2 ASP A 51 MG MG A 407 1555 1555 2.83 LINK OG1 THR A 62 MG MG A 407 1555 1555 2.06 LINK O2B GNP A 406 MG MG A 407 1555 1555 2.17 LINK O1A GNP A 406 MG MG A 407 1555 1555 2.96 LINK O3G GNP A 406 MG MG A 407 1555 1555 2.49 LINK MG MG A 407 O HOH A 410 1555 1555 2.79 LINK OG1 THR B 25 MG MG B 407 1555 1555 2.08 LINK OD2 ASP B 51 MG MG B 407 1555 1555 3.15 LINK OG1 THR B 62 MG MG B 407 1555 1555 2.20 LINK O2B GNP B 406 MG MG B 407 1555 1555 2.32 LINK O3G GNP B 406 MG MG B 407 1555 1555 2.51 LINK MG MG B 407 O HOH B 409 1555 1555 2.43 LINK OG1 THR C 25 MG MG C 407 1555 1555 2.39 LINK OD2 ASP C 51 MG MG C 407 1555 1555 2.95 LINK OG1 THR C 62 MG MG C 407 1555 1555 2.34 LINK O2B GNP C 406 MG MG C 407 1555 1555 2.37 LINK O1A GNP C 406 MG MG C 407 1555 1555 2.71 LINK O1G GNP C 406 MG MG C 407 1555 1555 3.14 LINK O3G GNP C 406 MG MG C 407 1555 1555 2.64 SITE 1 AC1 5 THR A 25 ASP A 51 THR A 62 GNP A 406 SITE 2 AC1 5 HOH A 410 SITE 1 AC2 5 THR B 25 ASP B 51 THR B 62 GNP B 406 SITE 2 AC2 5 HOH B 409 SITE 1 AC3 5 THR C 25 TYR C 47 ASP C 51 THR C 62 SITE 2 AC3 5 GNP C 406 SITE 1 AC4 10 HIS A 67 GLU A 226 THR A 239 GLU A 271 SITE 2 AC4 10 MET A 272 HIS A 273 ARG A 274 ASN A 285 SITE 3 AC4 10 VAL A 286 A D 76 SITE 1 AC5 10 HIS B 67 GLU B 226 THR B 239 GLU B 271 SITE 2 AC5 10 MET B 272 HIS B 273 ARG B 274 ASN B 285 SITE 3 AC5 10 VAL B 286 A E 76 SITE 1 AC6 10 HIS C 67 GLU C 226 THR C 239 GLU C 271 SITE 2 AC6 10 MET C 272 HIS C 273 ARG C 274 ASN C 285 SITE 3 AC6 10 VAL C 286 A F 76 SITE 1 AC7 20 VAL A 20 ASP A 21 HIS A 22 GLY A 23 SITE 2 AC7 20 LYS A 24 THR A 25 THR A 26 TYR A 47 SITE 3 AC7 20 ILE A 61 THR A 62 GLY A 84 ASN A 136 SITE 4 AC7 20 LYS A 137 ASP A 139 MET A 140 SER A 174 SITE 5 AC7 20 ALA A 175 LEU A 176 MG A 407 HOH A 410 SITE 1 AC8 20 VAL B 20 ASP B 21 HIS B 22 GLY B 23 SITE 2 AC8 20 LYS B 24 THR B 25 THR B 26 TYR B 47 SITE 3 AC8 20 ILE B 61 THR B 62 GLY B 84 ASN B 136 SITE 4 AC8 20 LYS B 137 ASP B 139 MET B 140 SER B 174 SITE 5 AC8 20 ALA B 175 LEU B 176 MG B 407 HOH B 409 SITE 1 AC9 19 VAL C 20 ASP C 21 HIS C 22 GLY C 23 SITE 2 AC9 19 LYS C 24 THR C 25 THR C 26 TYR C 47 SITE 3 AC9 19 ILE C 61 THR C 62 GLY C 84 ASN C 136 SITE 4 AC9 19 LYS C 137 ASP C 139 MET C 140 SER C 174 SITE 5 AC9 19 ALA C 175 LEU C 176 MG C 407 CRYST1 206.835 122.354 151.552 90.00 126.30 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004835 0.000000 0.003551 0.00000 SCALE2 0.000000 0.008173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008187 0.00000