PDB Short entry for 2ORW HEADER TRANSFERASE 04-FEB-07 2ORW TITLE THERMOTOGA MARITIMA THYMIDINE KINASE 1 LIKE ENZYME IN COMPLEX WITH TITLE 2 TP4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TDK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TMTK, TP4A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SEGURA-PENA,S.LUTZ,C.MONNERJAHN,M.KONRAD,A.LAVIE REVDAT 4 21-FEB-24 2ORW 1 REMARK LINK REVDAT 3 24-FEB-09 2ORW 1 VERSN REVDAT 2 22-MAY-07 2ORW 1 JRNL REVDAT 1 27-MAR-07 2ORW 0 JRNL AUTH D.SEGURA-PENA,S.LUTZ,C.MONNERJAHN,M.KONRAD,A.LAVIE JRNL TITL BINDING OF ATP TO TK1-LIKE ENZYMES IS ASSOCIATED WITH A JRNL TITL 2 CONFORMATIONAL CHANGE IN THE QUATERNARY STRUCTURE. JRNL REF J.MOL.BIOL. V. 369 129 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17407781 JRNL DOI 10.1016/J.JMB.2007.02.104 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 55418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5566 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2964 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 336 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.444 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2843 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3847 ; 1.778 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 5.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;33.642 ;24.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;13.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.042 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2004 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1430 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1954 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 324 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.086 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1737 ; 1.070 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2748 ; 1.723 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 2.764 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1099 ; 4.386 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ORW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI (111) SAGITTAL FOCUSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65% 2-METHYL-2,4-PENTANEDIOL (MPD), REMARK 280 0.1 M NA-ACETATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.27500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.27500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 102.55000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 ARG A 44 REMARK 465 TYR A 45 REMARK 465 HIS A 53 REMARK 465 SER A 54 REMARK 465 GLY A 55 REMARK 465 ASN A 56 REMARK 465 LYS A 182 REMARK 465 ARG A 183 REMARK 465 VAL A 184 REMARK 465 MET B 1 REMARK 465 SER B 43 REMARK 465 ARG B 44 REMARK 465 TYR B 45 REMARK 465 HIS B 46 REMARK 465 SER B 47 REMARK 465 SER B 54 REMARK 465 GLY B 55 REMARK 465 ASN B 56 REMARK 465 ARG B 183 REMARK 465 VAL B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 53 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 821 O HOH B 1003 1.75 REMARK 500 O HOH A 504 O HOH B 990 1.94 REMARK 500 O1C 4TA B 802 O HOH B 992 2.06 REMARK 500 O HOH A 537 O HOH A 652 2.10 REMARK 500 O3' 4TA B 801 O HOH B 986 2.13 REMARK 500 NE2 HIS B 61 O HOH B 926 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 147 14.56 -147.19 REMARK 500 ASP A 162 96.63 -164.18 REMARK 500 ILE B 41 54.04 178.44 REMARK 500 GLU B 64 -61.11 -94.42 REMARK 500 ASN B 147 15.23 -148.81 REMARK 500 ASP B 162 95.47 -161.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 HOH A 643 O 83.4 REMARK 620 3 4TA B 801 O2D 171.3 90.3 REMARK 620 4 4TA B 801 O2B 86.6 92.8 99.8 REMARK 620 5 HOH B 911 O 92.7 176.0 93.5 87.6 REMARK 620 6 HOH B 983 O 88.8 91.9 85.3 173.1 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 140 SG REMARK 620 2 CYS A 143 SG 104.2 REMARK 620 3 CYS A 173 SG 115.4 119.9 REMARK 620 4 CYS A 176 SG 102.0 117.7 96.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 4TA B 802 O2D 165.0 REMARK 620 3 4TA B 802 O2B 84.8 104.5 REMARK 620 4 HOH B 834 O 80.6 87.5 90.5 REMARK 620 5 HOH B 984 O 88.0 83.9 170.4 94.6 REMARK 620 6 HOH B 992 O 94.0 98.3 86.3 173.9 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 140 SG REMARK 620 2 CYS B 143 SG 104.3 REMARK 620 3 CYS B 173 SG 113.8 120.7 REMARK 620 4 CYS B 176 SG 104.6 117.0 95.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4TA B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4TA B 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ORV RELATED DB: PDB REMARK 900 HUMAN THYMIDINE KINASE 1 IN COMPLEX WITH TP4A DBREF 2ORW A 1 184 UNP Q9WYN2 KITH_THEMA 1 184 DBREF 2ORW B 1 184 UNP Q9WYN2 KITH_THEMA 1 184 SEQRES 1 A 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 A 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 A 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 A 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 A 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 A 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 A 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 A 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 A 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 A 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 A 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 A 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 A 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 A 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 A 184 ARG VAL SEQRES 1 B 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 B 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 B 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 B 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 B 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 B 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 B 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 B 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 B 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 B 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 B 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 B 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 B 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 B 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 B 184 ARG VAL HET ZN A 401 1 HET MG A 501 1 HET ZN B 402 1 HET MG B 502 1 HET 4TA B 801 51 HET 4TA B 802 51 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 4TA P1-(5'-ADENOSYL)P4-(5'-(2'-DEOXY-THYMIDYL)) HETNAM 2 4TA TETRAPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 7 4TA 2(C20 H25 N7 O20 P4 4-) FORMUL 9 HOH *370(H2 O) HELIX 1 1 GLY A 15 GLY A 30 1 16 HELIX 2 2 ARG A 65 ILE A 73 5 9 HELIX 3 3 GLU A 84 PHE A 88 5 5 HELIX 4 4 ASN A 89 PRO A 90 5 2 HELIX 5 5 SER A 91 ARG A 102 1 12 HELIX 6 6 PHE A 120 ALA A 130 1 11 HELIX 7 7 CYS A 173 LYS A 181 1 9 HELIX 8 8 GLY B 15 GLY B 30 1 16 HELIX 9 9 ARG B 65 ILE B 73 5 9 HELIX 10 10 GLU B 84 PHE B 88 5 5 HELIX 11 11 ASN B 89 PRO B 90 5 2 HELIX 12 12 SER B 91 ARG B 102 1 12 HELIX 13 13 PHE B 120 ALA B 130 1 11 HELIX 14 14 CYS B 173 LYS B 182 1 10 SHEET 1 A 6 HIS A 61 ILE A 63 0 SHEET 2 A 6 LYS A 33 PRO A 39 1 N VAL A 36 O HIS A 61 SHEET 3 A 6 THR A 77 ILE A 82 1 O PHE A 81 N PHE A 37 SHEET 4 A 6 ASP A 105 LEU A 111 1 O PHE A 107 N ILE A 82 SHEET 5 A 6 LEU A 5 GLY A 10 1 N ILE A 8 O CYS A 108 SHEET 6 A 6 THR A 132 LYS A 135 1 O ILE A 134 N VAL A 7 SHEET 1 B 2 MET A 49 ILE A 50 0 SHEET 2 B 2 VAL A 58 GLU A 59 -1 O VAL A 58 N ILE A 50 SHEET 1 C 2 LEU A 150 LYS A 153 0 SHEET 2 C 2 TYR A 169 VAL A 172 -1 O ILE A 170 N LEU A 152 SHEET 1 D 6 HIS B 61 ILE B 63 0 SHEET 2 D 6 LYS B 33 PRO B 39 1 N VAL B 36 O HIS B 61 SHEET 3 D 6 THR B 77 ILE B 82 1 O PHE B 81 N PHE B 37 SHEET 4 D 6 ASP B 105 LEU B 111 1 O PHE B 107 N VAL B 80 SHEET 5 D 6 LEU B 5 GLY B 10 1 N ILE B 8 O CYS B 108 SHEET 6 D 6 THR B 132 LYS B 135 1 O ILE B 134 N VAL B 7 SHEET 1 E 2 MET B 49 ILE B 50 0 SHEET 2 E 2 VAL B 58 GLU B 59 -1 O VAL B 58 N ILE B 50 SHEET 1 F 2 LEU B 150 LYS B 153 0 SHEET 2 F 2 TYR B 169 VAL B 172 -1 O ILE B 170 N LEU B 152 LINK OG1 THR A 17 MG MG A 501 1555 1555 2.09 LINK SG CYS A 140 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 143 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 173 ZN ZN A 401 1555 1555 2.40 LINK SG CYS A 176 ZN ZN A 401 1555 1555 2.36 LINK MG MG A 501 O HOH A 643 1555 1555 2.22 LINK MG MG A 501 O2D 4TA B 801 1555 1555 1.95 LINK MG MG A 501 O2B 4TA B 801 1555 1555 2.05 LINK MG MG A 501 O HOH B 911 1555 1555 2.11 LINK MG MG A 501 O HOH B 983 1555 1555 2.06 LINK OG1 THR B 17 MG MG B 502 1555 1555 2.08 LINK SG CYS B 140 ZN ZN B 402 1555 1555 2.39 LINK SG CYS B 143 ZN ZN B 402 1555 1555 2.35 LINK SG CYS B 173 ZN ZN B 402 1555 1555 2.37 LINK SG CYS B 176 ZN ZN B 402 1555 1555 2.37 LINK MG MG B 502 O2D 4TA B 802 1555 1555 1.95 LINK MG MG B 502 O2B 4TA B 802 1555 1555 2.11 LINK MG MG B 502 O HOH B 834 1555 1555 2.43 LINK MG MG B 502 O HOH B 984 1555 1555 2.08 LINK MG MG B 502 O HOH B 992 1555 1555 1.85 SITE 1 AC1 4 CYS A 140 CYS A 143 CYS A 173 CYS A 176 SITE 1 AC2 4 CYS B 140 CYS B 143 CYS B 173 CYS B 176 SITE 1 AC3 5 THR A 17 HOH A 643 4TA B 801 HOH B 911 SITE 2 AC3 5 HOH B 983 SITE 1 AC4 5 THR B 17 4TA B 802 HOH B 834 HOH B 984 SITE 2 AC4 5 HOH B 992 SITE 1 AC5 38 MET A 12 TYR A 13 SER A 14 GLY A 15 SITE 2 AC5 38 LYS A 16 THR A 17 THR A 18 GLU A 84 SITE 3 AC5 38 PHE A 87 LEU A 111 THR A 114 HIS A 115 SITE 4 AC5 38 ALA A 138 VAL A 139 THR A 151 GLU A 160 SITE 5 AC5 38 ASP A 162 VAL A 163 GLY A 164 TYR A 169 SITE 6 AC5 38 MG A 501 HOH A 535 HOH A 545 HOH A 643 SITE 7 AC5 38 GLU B 25 LEU B 29 HOH B 807 HOH B 810 SITE 8 AC5 38 HOH B 833 HOH B 911 HOH B 921 HOH B 935 SITE 9 AC5 38 HOH B 955 HOH B 961 HOH B 983 HOH B 986 SITE 10 AC5 38 HOH B 998 HOH B1001 SITE 1 AC6 35 GLU A 25 LEU A 29 MET B 12 TYR B 13 SITE 2 AC6 35 SER B 14 GLY B 15 LYS B 16 THR B 17 SITE 3 AC6 35 THR B 18 SER B 52 GLU B 84 GLN B 86 SITE 4 AC6 35 PHE B 87 LEU B 111 THR B 114 HIS B 115 SITE 5 AC6 35 ALA B 138 VAL B 139 THR B 151 GLU B 160 SITE 6 AC6 35 ASP B 162 VAL B 163 GLY B 164 TYR B 169 SITE 7 AC6 35 MG B 502 HOH B 827 HOH B 834 HOH B 838 SITE 8 AC6 35 HOH B 919 HOH B 934 HOH B 965 HOH B 974 SITE 9 AC6 35 HOH B 984 HOH B 992 HOH B 995 CRYST1 102.550 59.630 61.440 90.00 103.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009751 0.000000 0.002271 0.00000 SCALE2 0.000000 0.016770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016712 0.00000