PDB Short entry for 3GJ9 HEADER SIGNALING PROTEIN 08-MAR-09 3GJ9 TITLE CRYSTAL STRUCTURE OF TIP-1 IN COMPLEX WITH C-TERMINAL OF TITLE 2 KIR2.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAX1-BINDING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TAX INTERACTION PROTEIN 1, TIP-1, GLUTAMINASE- COMPND 5 INTERACTING PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: C-TERMINAL PEPTIDE FROM INWARD RECTIFIER COMPND 9 POTASSIUM CHANNEL 4; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: C-TERMINAL PEPTIDE OF INWARD RECTIFIER K(+) COMPND 12 CHANNEL KIR2.3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS TIP-1, KIR2.3, PDZ DOMAIN, CYTOPLASM, NUCLEUS, KEYWDS 2 PHOSPHOPROTEIN, WNT SIGNALING PATHWAY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHEN REVDAT 1 15-DEC-09 3GJ9 0 JRNL AUTH X.YAN,H.ZHOU,J.ZHANG,C.SHI,X.XIE,Y.WU,C.TIAN, JRNL AUTH 2 Y.SHEN,J.LONG JRNL TITL MOLECULAR MECHANISM OF INWARD RECTIFIER POTASSIUM JRNL TITL 2 CHANNEL 2.3 REGULATION BY TAX-INTERACTING PROTEIN-1 JRNL REF J.MOL.BIOL. V. 392 967 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19635485 JRNL DOI 10.1016/J.JMB.2009.07.060 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 83181.190 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 9632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 515 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1347 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 73 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.48000 REMARK 3 B22 (A**2) : 6.48000 REMARK 3 B33 (A**2) : -12.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.70 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.680 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.030 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.380 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 58.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : SO4.PARAM REMARK 3 PARAMETER FILE 4 : GOL.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : SO4.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3GJ9 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB051929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10830 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3DIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, CACODYLATE BUFFER, ZINC REMARK 280 ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.75850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.13775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.37925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.75850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.37925 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.13775 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 118 REMARK 465 GLN A 119 REMARK 465 GLN A 120 REMARK 465 SER A 121 REMARK 465 MET A 122 REMARK 465 LEU A 123 REMARK 465 SER A 124 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 TYR B 3 REMARK 465 ILE B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 VAL B 9 REMARK 465 THR B 10 REMARK 465 ALA B 117 REMARK 465 VAL B 118 REMARK 465 GLN B 119 REMARK 465 GLN B 120 REMARK 465 SER B 121 REMARK 465 MET B 122 REMARK 465 LEU B 123 REMARK 465 SER B 124 REMARK 465 ASN C 436 REMARK 465 ILE C 437 REMARK 465 SER C 438 REMARK 465 TYR C 439 REMARK 465 ASN D 436 REMARK 465 ILE D 437 REMARK 465 SER D 438 REMARK 465 TYR D 439 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 10 OG1 CG2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 128 O HOH B 138 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 129 O HOH A 129 5555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 39.67 -90.05 REMARK 500 GLN A 112 109.61 -52.24 REMARK 500 LEU A 114 -152.48 50.91 REMARK 500 GLN A 115 22.02 40.40 REMARK 500 LYS A 116 68.17 -117.44 REMARK 500 ASN B 44 25.52 38.97 REMARK 500 PRO B 45 174.18 -59.66 REMARK 500 SER B 113 -156.43 -122.70 REMARK 500 GLN B 115 150.40 162.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 137 DISTANCE = 9.19 ANGSTROMS REMARK 525 HOH B 140 DISTANCE = 8.50 ANGSTROMS REMARK 525 HOH B 141 DISTANCE = 12.29 ANGSTROMS REMARK 525 HOH B 142 DISTANCE = 12.84 ANGSTROMS REMARK 525 HOH A 144 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH A 152 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A 155 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 159 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 160 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH A 162 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 177 DISTANCE = 7.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 127 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 62 OE2 REMARK 620 2 GLU A 67 OE2 88.7 REMARK 620 3 GLU B 17 OE1 95.6 93.4 REMARK 620 4 HOH A 128 O 108.5 98.5 153.2 REMARK 620 5 GLU B 17 OE2 76.6 150.4 63.3 110.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 126 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 62 OE2 REMARK 620 2 GLU B 67 OE2 86.8 REMARK 620 3 HOH B 164 O 122.0 111.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 125 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 125 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 126 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 127 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 126 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 127 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 128 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DIW RELATED DB: PDB REMARK 900 TIP-1 IN COMPLEX WITH C-TERMINAL B-CATENIN REMARK 900 RELATED ID: 3DJ1 RELATED DB: PDB REMARK 900 TIP-1 WILD TYPE REMARK 900 RELATED ID: 3DJ3 RELATED DB: PDB REMARK 900 C-TERMINAL TRUNCATION OF TIP-1 DBREF 3GJ9 A 1 124 UNP O14907 TX1B3_HUMAN 1 124 DBREF 3GJ9 B 1 124 UNP O14907 TX1B3_HUMAN 1 124 DBREF 3GJ9 C 436 445 UNP P48050 IRK4_HUMAN 436 445 DBREF 3GJ9 D 436 445 UNP P48050 IRK4_HUMAN 436 445 SEQRES 1 A 124 MET SER TYR ILE PRO GLY GLN PRO VAL THR ALA VAL VAL SEQRES 2 A 124 GLN ARG VAL GLU ILE HIS LYS LEU ARG GLN GLY GLU ASN SEQRES 3 A 124 LEU ILE LEU GLY PHE SER ILE GLY GLY GLY ILE ASP GLN SEQRES 4 A 124 ASP PRO SER GLN ASN PRO PHE SER GLU ASP LYS THR ASP SEQRES 5 A 124 LYS GLY ILE TYR VAL THR ARG VAL SER GLU GLY GLY PRO SEQRES 6 A 124 ALA GLU ILE ALA GLY LEU GLN ILE GLY ASP LYS ILE MET SEQRES 7 A 124 GLN VAL ASN GLY TRP ASP MET THR MET VAL THR HIS ASP SEQRES 8 A 124 GLN ALA ARG LYS ARG LEU THR LYS ARG SER GLU GLU VAL SEQRES 9 A 124 VAL ARG LEU LEU VAL THR ARG GLN SER LEU GLN LYS ALA SEQRES 10 A 124 VAL GLN GLN SER MET LEU SER SEQRES 1 B 124 MET SER TYR ILE PRO GLY GLN PRO VAL THR ALA VAL VAL SEQRES 2 B 124 GLN ARG VAL GLU ILE HIS LYS LEU ARG GLN GLY GLU ASN SEQRES 3 B 124 LEU ILE LEU GLY PHE SER ILE GLY GLY GLY ILE ASP GLN SEQRES 4 B 124 ASP PRO SER GLN ASN PRO PHE SER GLU ASP LYS THR ASP SEQRES 5 B 124 LYS GLY ILE TYR VAL THR ARG VAL SER GLU GLY GLY PRO SEQRES 6 B 124 ALA GLU ILE ALA GLY LEU GLN ILE GLY ASP LYS ILE MET SEQRES 7 B 124 GLN VAL ASN GLY TRP ASP MET THR MET VAL THR HIS ASP SEQRES 8 B 124 GLN ALA ARG LYS ARG LEU THR LYS ARG SER GLU GLU VAL SEQRES 9 B 124 VAL ARG LEU LEU VAL THR ARG GLN SER LEU GLN LYS ALA SEQRES 10 B 124 VAL GLN GLN SER MET LEU SER SEQRES 1 C 10 ASN ILE SER TYR ARG ARG GLU SER ALA ILE SEQRES 1 D 10 ASN ILE SER TYR ARG ARG GLU SER ALA ILE HET ZN A 125 1 HET ZN B 125 1 HET ZN B 126 1 HET ZN B 127 1 HET CL A 126 1 HET CL A 127 1 HET CL B 128 1 HET CL B 129 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 CL 4(CL 1-) FORMUL 13 HOH *106(H2 O) HELIX 1 1 ASP A 40 ASN A 44 5 5 HELIX 2 2 GLY A 64 GLY A 70 1 7 HELIX 3 3 THR A 89 THR A 98 1 10 HELIX 4 4 GLY B 64 GLY B 70 1 7 HELIX 5 5 THR B 89 THR B 98 1 10 SHEET 1 A 4 ALA A 11 HIS A 19 0 SHEET 2 A 4 VAL A 104 GLN A 112 -1 O LEU A 107 N VAL A 16 SHEET 3 A 4 LYS A 76 VAL A 80 -1 N MET A 78 O LEU A 108 SHEET 4 A 4 TRP A 83 ASP A 84 -1 O TRP A 83 N VAL A 80 SHEET 1 B 6 ALA A 11 HIS A 19 0 SHEET 2 B 6 VAL A 104 GLN A 112 -1 O LEU A 107 N VAL A 16 SHEET 3 B 6 LYS A 76 VAL A 80 -1 N MET A 78 O LEU A 108 SHEET 4 B 6 ILE A 55 VAL A 60 -1 N ILE A 55 O ILE A 77 SHEET 5 B 6 PHE A 31 GLY A 35 -1 N GLY A 34 O TYR A 56 SHEET 6 B 6 SER C 443 ALA C 444 -1 O SER C 443 N ILE A 33 SHEET 1 C 2 LEU A 21 GLN A 23 0 SHEET 2 C 2 ASN A 26 ILE A 28 -1 O ILE A 28 N LEU A 21 SHEET 1 D 4 VAL B 12 HIS B 19 0 SHEET 2 D 4 VAL B 104 ARG B 111 -1 O VAL B 109 N GLN B 14 SHEET 3 D 4 LYS B 76 VAL B 80 -1 N MET B 78 O LEU B 108 SHEET 4 D 4 TRP B 83 ASP B 84 -1 O TRP B 83 N VAL B 80 SHEET 1 E 6 VAL B 12 HIS B 19 0 SHEET 2 E 6 VAL B 104 ARG B 111 -1 O VAL B 109 N GLN B 14 SHEET 3 E 6 LYS B 76 VAL B 80 -1 N MET B 78 O LEU B 108 SHEET 4 E 6 ILE B 55 VAL B 60 -1 N ILE B 55 O ILE B 77 SHEET 5 E 6 PHE B 31 GLY B 35 -1 N GLY B 34 O TYR B 56 SHEET 6 E 6 SER D 443 ALA D 444 -1 O SER D 443 N ILE B 33 SHEET 1 F 2 LEU B 21 GLN B 23 0 SHEET 2 F 2 ASN B 26 ILE B 28 -1 O ILE B 28 N LEU B 21 LINK OE2 GLU A 62 ZN ZN B 127 1555 1555 1.82 LINK OE2 GLU A 67 ZN ZN B 127 1555 1555 2.12 LINK OE2 GLU A 103 ZN ZN A 125 1555 1555 2.02 LINK OE1 GLU B 17 ZN ZN B 127 1555 1555 2.34 LINK OE2 GLU B 62 ZN ZN B 126 1555 1555 1.95 LINK OE2 GLU B 67 ZN ZN B 126 1555 1555 2.04 LINK OE2 GLU B 103 ZN ZN B 125 1555 1555 2.15 LINK ZN ZN B 127 O HOH A 128 1555 1555 2.34 LINK OE2 GLU B 17 ZN ZN B 127 1555 1555 1.75 LINK ZN ZN B 126 O HOH B 164 1555 1555 2.57 SITE 1 AC1 4 HIS A 19 GLU A 103 GLU B 103 ZN B 125 SITE 1 AC2 4 GLU A 103 ZN A 125 HIS B 19 GLU B 103 SITE 1 AC3 5 GLU A 17 GLU B 62 GLU B 67 HOH B 135 SITE 2 AC3 5 HOH B 164 SITE 1 AC4 5 GLU A 62 GLU A 67 HOH A 128 GLU B 17 SITE 2 AC4 5 HOH B 134 SITE 1 AC5 4 ARG A 15 GLN A 79 GLY A 82 ARG A 106 SITE 1 AC6 3 GLN A 72 ILE A 73 ARG B 106 SITE 1 AC7 4 ARG B 15 GLN B 79 GLY B 82 ARG B 106 SITE 1 AC8 2 ARG A 106 ILE B 73 CRYST1 86.457 86.457 101.517 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009851 0.00000