PDB Short entry for 3VYB HEADER HYDROLASE/DNA 22-SEP-12 3VYB TITLE CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH TITLE 2 THE 5MCG/HMCG SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: METHYL CPG BINDING DOMAIN, UNP RESIDUES 69-136; COMPND 5 SYNONYM: METHYL-CPG-BINDING PROTEIN MBD4, MISMATCH-SPECIFIC DNA N- COMPND 6 GLYCOSYLASE; COMPND 7 EC: 3.2.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)- COMPND 11 3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)- COMPND 16 3'); COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MBD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS METHYL CPG BINDING DOMAIN, PROTEIN-DNA COMPLEX, VERSATILE BASE KEYWDS 2 RECOGNITION, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.OTANI,K.ARITA,T.KATO,M.KINOSHITA,M.ARIYOSHI,M.SHIRAKAWA REVDAT 3 08-NOV-23 3VYB 1 REMARK SEQADV LINK REVDAT 2 14-AUG-13 3VYB 1 JRNL REVDAT 1 16-JAN-13 3VYB 0 JRNL AUTH J.OTANI,K.ARITA,T.KATO,M.KINOSHITA,H.KIMURA,I.SUETAKE, JRNL AUTH 2 S.TAJIMA,M.ARIYOSHI,M.SHIRAKAWA JRNL TITL STRUCTURAL BASIS OF THE VERSATILE DNA RECOGNITION ABILITY OF JRNL TITL 2 THE METHYL-CPG BINDING DOMAIN OF METHYL-CPG BINDING DOMAIN JRNL TITL 3 PROTEIN 4 JRNL REF J.BIOL.CHEM. V. 288 6351 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23316048 JRNL DOI 10.1074/JBC.M112.431098 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 9351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7032 - 3.4607 0.99 3170 153 0.1716 0.1968 REMARK 3 2 3.4607 - 2.7472 0.99 3013 170 0.1948 0.2278 REMARK 3 3 2.7472 - 2.4000 0.89 2712 133 0.2838 0.3224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 39.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.02430 REMARK 3 B22 (A**2) : 8.10930 REMARK 3 B33 (A**2) : 2.91490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1171 REMARK 3 ANGLE : 1.008 1694 REMARK 3 CHIRALITY : 0.056 182 REMARK 3 PLANARITY : 0.003 118 REMARK 3 DIHEDRAL : 26.872 475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 3.7555 12.0077 4.2199 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.2414 REMARK 3 T33: 0.2715 T12: -0.0150 REMARK 3 T13: 0.0346 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 0.5204 L22: 0.7592 REMARK 3 L33: 0.8684 L12: -0.0042 REMARK 3 L13: 0.5374 L23: 0.1364 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.0180 S13: 0.1899 REMARK 3 S21: -0.1543 S22: 0.1438 S23: 0.0997 REMARK 3 S31: 0.0208 S32: 0.0187 S33: -0.1022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 18.9074 12.4405 -14.1120 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.3574 REMARK 3 T33: 0.5079 T12: -0.1182 REMARK 3 T13: 0.0550 T23: 0.1039 REMARK 3 L TENSOR REMARK 3 L11: 2.3511 L22: 0.6930 REMARK 3 L33: 0.6149 L12: 1.1076 REMARK 3 L13: 0.2227 L23: 0.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.4850 S13: -0.5973 REMARK 3 S21: -0.2576 S22: -0.0716 S23: -0.4990 REMARK 3 S31: -0.1390 S32: -0.1881 S33: 0.0227 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 22.4674 13.8384 -11.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.5933 REMARK 3 T33: 0.3734 T12: -0.0809 REMARK 3 T13: 0.0508 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.9438 L22: 0.4368 REMARK 3 L33: 0.0450 L12: -0.9158 REMARK 3 L13: 0.2530 L23: -0.2555 REMARK 3 S TENSOR REMARK 3 S11: -0.3740 S12: -0.2072 S13: 0.4443 REMARK 3 S21: -0.2628 S22: 0.2009 S23: -0.3107 REMARK 3 S31: 0.0173 S32: 0.1768 S33: 0.1312 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000095652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3VXV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 1500, 0.1M SODIUM ACETATE, 0.1M REMARK 280 SODIUM CACODYLATE, PH 4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.86250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.86250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.34650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.87900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.34650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.87900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.86250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.34650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.87900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.86250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.34650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.87900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 68 REMARK 465 GLY A 69 REMARK 465 HIS A 70 REMARK 465 LYS A 71 REMARK 465 LYS A 135 REMARK 465 GLY A 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 11 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VXV RELATED DB: PDB REMARK 900 RELATED ID: 3VXX RELATED DB: PDB REMARK 900 RELATED ID: 3VYQ RELATED DB: PDB DBREF 3VYB A 69 136 UNP Q9Z2D7 MBD4_MOUSE 69 136 DBREF 3VYB B 1 14 PDB 3VYB 3VYB 1 14 DBREF 3VYB C 1 14 PDB 3VYB 3VYB 1 14 SEQADV 3VYB SER A 68 UNP Q9Z2D7 EXPRESSION TAG SEQRES 1 A 69 SER GLY HIS LYS PRO VAL PRO CYS GLY TRP GLU ARG VAL SEQRES 2 A 69 VAL LYS GLN ARG LEU SER GLY LYS THR ALA GLY LYS PHE SEQRES 3 A 69 ASP VAL TYR PHE ILE SER PRO GLN GLY LEU LYS PHE ARG SEQRES 4 A 69 SER LYS ARG SER LEU ALA ASN TYR LEU LEU LYS ASN GLY SEQRES 5 A 69 GLU THR PHE LEU LYS PRO GLU ASP PHE ASN PHE THR VAL SEQRES 6 A 69 LEU PRO LYS GLY SEQRES 1 B 14 DG DT DC DA DC DT DA DC 5CM DG DG DA DC SEQRES 2 B 14 DA SEQRES 1 C 14 DG DT DC 5HC DG DG DT DA DG DT DG DA DC SEQRES 2 C 14 DT MODRES 3VYB 5CM B 9 DC MODRES 3VYB 5HC C 4 DC HET 5CM B 9 20 HET 5HC C 4 21 HET ACT A 201 4 HET EDO A 202 4 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM 5HC 2'-DEOXY-5-(HYDROXYMETHYL)CYTIDINE 5'-(DIHYDROGEN HETNAM 2 5HC PHOSPHATE) HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 5CM C10 H16 N3 O7 P FORMUL 3 5HC C10 H16 N3 O8 P FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *71(H2 O) HELIX 1 1 SER A 107 GLY A 119 1 13 HELIX 2 2 LYS A 124 PHE A 128 5 5 SHEET 1 A 3 GLU A 78 GLN A 83 0 SHEET 2 A 3 PHE A 93 ILE A 98 -1 O TYR A 96 N VAL A 80 SHEET 3 A 3 LYS A 104 PHE A 105 -1 O PHE A 105 N PHE A 97 SSBOND 1 CYS A 75 CYS A 75 1555 3555 2.03 LINK O3' DC B 8 P 5CM B 9 1555 1555 1.60 LINK O3' 5CM B 9 P DG B 10 1555 1555 1.60 LINK O3' DC C 3 P 5HC C 4 1555 1555 1.61 LINK O3' 5HC C 4 P DG C 5 1555 1555 1.61 SITE 1 AC1 2 GLU A 120 DT C 14 SITE 1 AC2 6 GLN A 83 ARG A 84 HOH A 323 DC C 3 SITE 2 AC2 6 5HC C 4 HOH C 106 CRYST1 88.693 97.758 55.725 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017945 0.00000