PDB Short entry for 6JUR HEADER REPLICATION/DNA 15-APR-19 6JUR TITLE MSDPO4-DNA COMPLEX 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, F; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*TP*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*A)-3'); COMPND 10 CHAIN: B, C, G, H; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA TEMPLATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 VARIANT: ATCC 700084 / MC(2)155; SOURCE 7 GENE: DINB, MSMEG_1014, MSMEG_2294; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: C41DE3; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562 KEYWDS DNA POLYMERASE, REPLICATION, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,M.K.JOHNSON REVDAT 3 22-NOV-23 6JUR 1 LINK REVDAT 2 26-FEB-20 6JUR 1 REMARK LINK REVDAT 1 19-FEB-20 6JUR 0 JRNL AUTH M.K.JOHNSON,J.KOTTUR,D.T.NAIR JRNL TITL A POLAR FILTER IN DNA POLYMERASES PREVENTS RIBONUCLEOTIDE JRNL TITL 2 INCORPORATION. JRNL REF NUCLEIC ACIDS RES. V. 47 10693 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31544946 JRNL DOI 10.1093/NAR/GKZ792 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5294 REMARK 3 NUCLEIC ACID ATOMS : 812 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6368 ; 0.027 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8853 ; 2.417 ; 1.864 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 7.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;36.003 ;22.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;17.220 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;19.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 988 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4522 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2774 ; 2.819 ; 2.937 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3464 ; 3.911 ; 4.384 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3594 ; 4.744 ; 3.775 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9970 ; 8.011 ;43.467 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4632 -21.1212 23.3902 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.0484 REMARK 3 T33: 0.0592 T12: -0.0027 REMARK 3 T13: -0.0249 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.4721 L22: 2.6047 REMARK 3 L33: 0.6122 L12: 0.7725 REMARK 3 L13: 0.0744 L23: 0.1662 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.0198 S13: -0.1816 REMARK 3 S21: -0.0047 S22: -0.0118 S23: -0.0484 REMARK 3 S31: -0.0827 S32: 0.0724 S33: 0.0554 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 RESIDUE RANGE : A 80 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0791 -21.6015 28.3472 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0383 REMARK 3 T33: 0.2281 T12: -0.0002 REMARK 3 T13: 0.0134 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.7011 L22: 1.2763 REMARK 3 L33: 1.0246 L12: -1.0965 REMARK 3 L13: -0.6766 L23: 0.9732 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: 0.0199 S13: -0.4895 REMARK 3 S21: 0.0167 S22: -0.0484 S23: 0.3029 REMARK 3 S31: -0.0281 S32: -0.0456 S33: 0.0381 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6318 0.5651 30.2398 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.0843 REMARK 3 T33: 0.0548 T12: -0.0161 REMARK 3 T13: 0.0215 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.2122 L22: 1.5189 REMARK 3 L33: 0.1599 L12: -0.2499 REMARK 3 L13: -0.0350 L23: 0.2966 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: -0.0353 S13: 0.0008 REMARK 3 S21: -0.0409 S22: 0.1040 S23: 0.0157 REMARK 3 S31: -0.0877 S32: 0.0214 S33: -0.0411 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 347 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6959 -3.7055 0.2358 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.0843 REMARK 3 T33: 0.0495 T12: -0.0156 REMARK 3 T13: -0.0535 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.1367 L22: 0.6132 REMARK 3 L33: 1.1371 L12: -0.3470 REMARK 3 L13: 0.7100 L23: -0.7976 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.1398 S13: 0.1143 REMARK 3 S21: 0.0314 S22: -0.1129 S23: -0.0457 REMARK 3 S31: -0.0688 S32: 0.1506 S33: 0.1226 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 837 B 848 REMARK 3 RESIDUE RANGE : C 866 C 873 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3077 -2.3087 15.6451 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.1006 REMARK 3 T33: 0.1718 T12: -0.0565 REMARK 3 T13: -0.0291 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.5626 L22: 3.0889 REMARK 3 L33: 0.2622 L12: 1.9124 REMARK 3 L13: -0.5181 L23: -0.3904 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: -0.1298 S13: 0.0320 REMARK 3 S21: 0.2015 S22: -0.2071 S23: 0.3944 REMARK 3 S31: -0.1135 S32: 0.0741 S33: 0.0502 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 11 F 79 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5707 20.9386 46.8749 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.1171 REMARK 3 T33: 0.0694 T12: 0.0039 REMARK 3 T13: 0.0212 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 2.1019 L22: 0.5740 REMARK 3 L33: 1.9137 L12: 0.7592 REMARK 3 L13: 1.2879 L23: 1.0366 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: -0.2609 S13: 0.1899 REMARK 3 S21: -0.0365 S22: -0.1090 S23: 0.0922 REMARK 3 S31: -0.0216 S32: -0.1710 S33: 0.1752 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 10 REMARK 3 RESIDUE RANGE : F 80 F 170 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3705 16.5860 50.2498 REMARK 3 T TENSOR REMARK 3 T11: 0.0462 T22: 0.1820 REMARK 3 T33: 0.0853 T12: 0.0111 REMARK 3 T13: -0.0005 T23: -0.0996 REMARK 3 L TENSOR REMARK 3 L11: 2.3066 L22: 1.9317 REMARK 3 L33: 0.4764 L12: -1.5954 REMARK 3 L13: -0.7116 L23: 0.5405 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.4542 S13: 0.2495 REMARK 3 S21: -0.1634 S22: 0.1436 S23: -0.1571 REMARK 3 S31: 0.0402 S32: 0.1212 S33: -0.1451 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 171 F 244 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9191 3.7405 32.2595 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0690 REMARK 3 T33: 0.0984 T12: -0.0003 REMARK 3 T13: -0.0407 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.1966 L22: 1.0746 REMARK 3 L33: 0.6068 L12: 0.1424 REMARK 3 L13: 0.1001 L23: 0.7053 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.0127 S13: 0.0309 REMARK 3 S21: -0.0604 S22: 0.0096 S23: 0.1626 REMARK 3 S31: 0.0399 S32: 0.0538 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 245 F 347 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2212 31.7383 20.2404 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.0413 REMARK 3 T33: 0.0407 T12: -0.0191 REMARK 3 T13: 0.0216 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.1507 L22: 0.7060 REMARK 3 L33: 0.6604 L12: 0.5039 REMARK 3 L13: 0.1054 L23: -0.4668 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: 0.0336 S13: 0.0107 REMARK 3 S21: -0.1307 S22: 0.0179 S23: 0.0214 REMARK 3 S31: 0.0529 S32: 0.0069 S33: -0.0594 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 837 G 848 REMARK 3 RESIDUE RANGE : H 866 H 873 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8694 17.8872 26.6691 REMARK 3 T TENSOR REMARK 3 T11: 0.1115 T22: 0.0447 REMARK 3 T33: 0.1324 T12: -0.0387 REMARK 3 T13: -0.0367 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.9913 L22: 0.9019 REMARK 3 L33: 1.0345 L12: -0.3819 REMARK 3 L13: 0.4925 L23: 0.5738 REMARK 3 S TENSOR REMARK 3 S11: 0.1743 S12: -0.0026 S13: -0.0705 REMARK 3 S21: -0.1137 S22: 0.0850 S23: -0.1355 REMARK 3 S31: 0.0784 S32: 0.0979 S33: -0.2593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58048 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 70.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JUL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2KMME 14%, NACL 0.2MM, BIS TRIS REMARK 280 PROPANE PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.33500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.38500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.38500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 348 REMARK 465 ARG A 349 REMARK 465 PRO A 350 REMARK 465 ALA A 351 REMARK 465 VAL A 352 REMARK 465 THR A 353 REMARK 465 ALA A 354 REMARK 465 GLY A 355 REMARK 465 THR A 356 REMARK 465 DG B 849 REMARK 465 DG B 850 REMARK 465 DA B 851 REMARK 465 DC B 852 REMARK 465 DC B 853 REMARK 465 DC B 854 REMARK 465 DT C 856 REMARK 465 DC C 857 REMARK 465 DT C 858 REMARK 465 DG C 859 REMARK 465 DG C 860 REMARK 465 DG C 861 REMARK 465 DG C 862 REMARK 465 DT C 863 REMARK 465 DC C 864 REMARK 465 DC C 865 REMARK 465 PRO F 348 REMARK 465 ARG F 349 REMARK 465 PRO F 350 REMARK 465 ALA F 351 REMARK 465 VAL F 352 REMARK 465 THR F 353 REMARK 465 ALA F 354 REMARK 465 GLY F 355 REMARK 465 THR F 356 REMARK 465 DG G 849 REMARK 465 DG G 850 REMARK 465 DA G 851 REMARK 465 DC G 852 REMARK 465 DC G 853 REMARK 465 DC G 854 REMARK 465 DT H 856 REMARK 465 DC H 857 REMARK 465 DT H 858 REMARK 465 DG H 859 REMARK 465 DG H 860 REMARK 465 DG H 861 REMARK 465 DG H 862 REMARK 465 DT H 863 REMARK 465 DC H 864 REMARK 465 DC H 865 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 277 O HOH A 501 2.03 REMARK 500 O HOH F 505 O HOH F 614 2.04 REMARK 500 C1 2TM F 401 O HOH F 512 2.12 REMARK 500 OD2 ASP F 37 O HOH F 501 2.18 REMARK 500 O HOH F 595 O HOH F 608 2.18 REMARK 500 O VAL A 132 OG1 THR A 136 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 50 CZ TYR A 50 OH 0.116 REMARK 500 GLU A 54 CD GLU A 54 OE2 0.074 REMARK 500 ASP A 72 CB ASP A 72 CG 0.134 REMARK 500 TRP A 104 CE2 TRP A 104 CD2 0.077 REMARK 500 GLU A 123 CD GLU A 123 OE2 0.067 REMARK 500 GLU A 126 CG GLU A 126 CD 0.109 REMARK 500 MET A 172 N MET A 172 CA -0.122 REMARK 500 MET A 172 C MET A 172 O -0.194 REMARK 500 THR A 173 CB THR A 173 CG2 -0.228 REMARK 500 THR A 173 C THR A 173 O -0.189 REMARK 500 VAL A 174 C VAL A 174 O -0.158 REMARK 500 MET A 175 C MET A 175 O -0.150 REMARK 500 TRP A 242 CB TRP A 242 CG 0.108 REMARK 500 TYR A 298 CE1 TYR A 298 CZ 0.087 REMARK 500 LEU A 329 CG LEU A 329 CD2 0.243 REMARK 500 DT B 837 O3' DC B 838 P 0.091 REMARK 500 DC B 838 N1 DC B 838 C6 0.056 REMARK 500 DC B 838 N3 DC B 838 C4 0.046 REMARK 500 DG B 843 O3' DG B 843 C3' -0.036 REMARK 500 DT B 847 C4 DT B 847 O4 -0.059 REMARK 500 DA B 848 C5 DA B 848 N7 0.037 REMARK 500 DA B 848 C6 DA B 848 N6 -0.051 REMARK 500 VAL F 44 CB VAL F 44 CG2 -0.138 REMARK 500 THR F 46 CB THR F 46 CG2 -0.218 REMARK 500 ASP F 84 CB ASP F 84 CG 0.156 REMARK 500 GLU F 118 CD GLU F 118 OE1 0.107 REMARK 500 MET F 175 C MET F 175 O -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 PRO A 116 C - N - CA ANGL. DEV. = -9.8 DEGREES REMARK 500 GLU A 118 N - CA - C ANGL. DEV. = -23.9 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LYS A 159 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 268 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU A 335 CA - CB - CG ANGL. DEV. = 23.8 DEGREES REMARK 500 DC B 838 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC B 838 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA B 848 C5 - N7 - C8 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA B 848 N7 - C8 - N9 ANGL. DEV. = -3.4 DEGREES REMARK 500 DA B 848 C8 - N9 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 868 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 ASP F 24 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG F 26 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 THR F 46 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG F 64 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG F 64 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG F 129 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG F 129 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG F 245 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG F 245 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP F 256 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP F 256 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG F 287 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG F 287 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG H 868 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG H 868 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 60.14 33.75 REMARK 500 ASP A 79 75.90 -112.18 REMARK 500 PRO A 116 -81.82 -92.42 REMARK 500 ASP A 117 14.00 -179.89 REMARK 500 SER A 119 -157.67 -101.16 REMARK 500 SER A 145 -151.52 -150.54 REMARK 500 TRP A 171 -78.58 -53.22 REMARK 500 LEU A 329 49.91 -90.30 REMARK 500 ASP A 346 -66.26 -101.93 REMARK 500 GLN F 12 64.60 37.17 REMARK 500 SER F 145 -155.22 -156.31 REMARK 500 LEU F 329 57.93 -105.02 REMARK 500 ASP F 346 -124.05 -109.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 117 GLU A 118 119.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 ASP A 107 OD1 130.8 REMARK 620 3 ASP A 107 OD2 106.9 51.5 REMARK 620 4 GLU A 108 OE2 101.1 83.1 134.6 REMARK 620 5 2TM A 401 O1A 122.4 106.1 116.1 74.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 LEU A 10 O 78.5 REMARK 620 3 ASP A 107 OD2 86.1 102.9 REMARK 620 4 2TM A 401 O2G 99.4 88.1 168.6 REMARK 620 5 2TM A 401 O2B 177.7 102.1 95.9 78.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 9 OD2 REMARK 620 2 ASP F 107 OD1 124.4 REMARK 620 3 ASP F 107 OD2 89.9 49.5 REMARK 620 4 GLU F 108 OE2 106.2 87.7 134.1 REMARK 620 5 2TM F 401 O1A 105.9 117.2 102.1 113.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 9 OD1 REMARK 620 2 LEU F 10 O 75.6 REMARK 620 3 ASP F 107 OD2 78.8 95.3 REMARK 620 4 2TM F 401 O2G 100.2 81.7 177.0 REMARK 620 5 2TM F 401 O2B 172.1 96.5 101.7 78.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2TM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2TM F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN F 403 DBREF 6JUR A 1 356 UNP A0QR77 A0QR77_MYCS2 1 356 DBREF 6JUR B 837 854 PDB 6JUR 6JUR 837 854 DBREF 6JUR C 856 873 PDB 6JUR 6JUR 856 873 DBREF 6JUR F 1 356 UNP A0QR77 A0QR77_MYCS2 1 356 DBREF 6JUR G 837 854 PDB 6JUR 6JUR 837 854 DBREF 6JUR H 856 873 PDB 6JUR 6JUR 856 873 SEQADV 6JUR TYR A 14 UNP A0QR77 LEU 14 ENGINEERED MUTATION SEQADV 6JUR TYR F 14 UNP A0QR77 LEU 14 ENGINEERED MUTATION SEQRES 1 A 356 MET THR LYS TRP VAL LEU HIS VAL ASP LEU ASP GLN PHE SEQRES 2 A 356 TYR ALA SER VAL GLU LEU ARG ARG ARG PRO ASP LEU ARG SEQRES 3 A 356 GLY GLN PRO VAL ILE VAL GLY GLY SER GLY ASP PRO SER SEQRES 4 A 356 GLU PRO ARG LYS VAL VAL THR CYS ALA SER TYR GLU ALA SEQRES 5 A 356 ARG GLU PHE GLY VAL HIS ALA GLY MET PRO LEU ARG ALA SEQRES 6 A 356 ALA ALA ARG ARG CYS PRO ASP ALA THR PHE LEU PRO SER SEQRES 7 A 356 ASP PRO ALA ALA TYR ASP GLU ALA SER GLU GLN VAL MET SEQRES 8 A 356 GLY LEU LEU ARG ASP LEU GLY HIS PRO LEU GLU VAL TRP SEQRES 9 A 356 GLY TRP ASP GLU ALA TYR LEU GLY ALA ASP LEU PRO ASP SEQRES 10 A 356 GLU SER ASP PRO VAL GLU VAL ALA GLU ARG ILE ARG THR SEQRES 11 A 356 VAL VAL ALA ALA GLU THR GLY LEU SER CYS SER VAL GLY SEQRES 12 A 356 ILE SER ASP ASN LYS GLN ARG ALA LYS VAL ALA THR GLY SEQRES 13 A 356 PHE ALA LYS PRO ALA GLY ILE TYR VAL LEU THR GLU ALA SEQRES 14 A 356 ASN TRP MET THR VAL MET GLY ASP ARG PRO PRO ASP ALA SEQRES 15 A 356 LEU TRP GLY VAL GLY PRO LYS THR THR LYS LYS LEU ALA SEQRES 16 A 356 ALA MET GLY ILE THR THR VAL ALA ASP LEU ALA VAL THR SEQRES 17 A 356 ASP PRO SER VAL LEU THR THR ALA PHE GLY PRO SER THR SEQRES 18 A 356 GLY LEU TRP LEU LEU LEU LEU ALA LYS GLY GLY GLY ASP SEQRES 19 A 356 THR GLU VAL SER SER GLU PRO TRP VAL PRO ARG SER ARG SEQRES 20 A 356 SER HIS VAL VAL THR PHE PRO GLN ASP LEU THR GLU ARG SEQRES 21 A 356 ARG GLU MET ASP SER ALA VAL ARG ASP LEU ALA LEU GLN SEQRES 22 A 356 THR LEU ALA GLU ILE VAL GLU GLN GLY ARG ILE VAL THR SEQRES 23 A 356 ARG VAL ALA VAL THR VAL ARG THR SER THR PHE TYR THR SEQRES 24 A 356 ARG THR LYS ILE ARG LYS LEU PRO ALA PRO SER THR ASP SEQRES 25 A 356 ALA GLY GLN ILE VAL ASP THR ALA LEU ALA VAL LEU ASP SEQRES 26 A 356 GLN PHE GLU LEU ASP ARG PRO VAL ARG LEU LEU GLY VAL SEQRES 27 A 356 ARG LEU GLU LEU ALA MET ASP ASP VAL PRO ARG PRO ALA SEQRES 28 A 356 VAL THR ALA GLY THR SEQRES 1 B 18 DT DC DT DG DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC SEQRES 1 C 18 DT DC DT DG DG DG DG DT DC DC DT DA DG SEQRES 2 C 18 DG DA DC DC DC SEQRES 1 F 356 MET THR LYS TRP VAL LEU HIS VAL ASP LEU ASP GLN PHE SEQRES 2 F 356 TYR ALA SER VAL GLU LEU ARG ARG ARG PRO ASP LEU ARG SEQRES 3 F 356 GLY GLN PRO VAL ILE VAL GLY GLY SER GLY ASP PRO SER SEQRES 4 F 356 GLU PRO ARG LYS VAL VAL THR CYS ALA SER TYR GLU ALA SEQRES 5 F 356 ARG GLU PHE GLY VAL HIS ALA GLY MET PRO LEU ARG ALA SEQRES 6 F 356 ALA ALA ARG ARG CYS PRO ASP ALA THR PHE LEU PRO SER SEQRES 7 F 356 ASP PRO ALA ALA TYR ASP GLU ALA SER GLU GLN VAL MET SEQRES 8 F 356 GLY LEU LEU ARG ASP LEU GLY HIS PRO LEU GLU VAL TRP SEQRES 9 F 356 GLY TRP ASP GLU ALA TYR LEU GLY ALA ASP LEU PRO ASP SEQRES 10 F 356 GLU SER ASP PRO VAL GLU VAL ALA GLU ARG ILE ARG THR SEQRES 11 F 356 VAL VAL ALA ALA GLU THR GLY LEU SER CYS SER VAL GLY SEQRES 12 F 356 ILE SER ASP ASN LYS GLN ARG ALA LYS VAL ALA THR GLY SEQRES 13 F 356 PHE ALA LYS PRO ALA GLY ILE TYR VAL LEU THR GLU ALA SEQRES 14 F 356 ASN TRP MET THR VAL MET GLY ASP ARG PRO PRO ASP ALA SEQRES 15 F 356 LEU TRP GLY VAL GLY PRO LYS THR THR LYS LYS LEU ALA SEQRES 16 F 356 ALA MET GLY ILE THR THR VAL ALA ASP LEU ALA VAL THR SEQRES 17 F 356 ASP PRO SER VAL LEU THR THR ALA PHE GLY PRO SER THR SEQRES 18 F 356 GLY LEU TRP LEU LEU LEU LEU ALA LYS GLY GLY GLY ASP SEQRES 19 F 356 THR GLU VAL SER SER GLU PRO TRP VAL PRO ARG SER ARG SEQRES 20 F 356 SER HIS VAL VAL THR PHE PRO GLN ASP LEU THR GLU ARG SEQRES 21 F 356 ARG GLU MET ASP SER ALA VAL ARG ASP LEU ALA LEU GLN SEQRES 22 F 356 THR LEU ALA GLU ILE VAL GLU GLN GLY ARG ILE VAL THR SEQRES 23 F 356 ARG VAL ALA VAL THR VAL ARG THR SER THR PHE TYR THR SEQRES 24 F 356 ARG THR LYS ILE ARG LYS LEU PRO ALA PRO SER THR ASP SEQRES 25 F 356 ALA GLY GLN ILE VAL ASP THR ALA LEU ALA VAL LEU ASP SEQRES 26 F 356 GLN PHE GLU LEU ASP ARG PRO VAL ARG LEU LEU GLY VAL SEQRES 27 F 356 ARG LEU GLU LEU ALA MET ASP ASP VAL PRO ARG PRO ALA SEQRES 28 F 356 VAL THR ALA GLY THR SEQRES 1 G 18 DT DC DT DG DG DG DG DT DC DC DT DA DG SEQRES 2 G 18 DG DA DC DC DC SEQRES 1 H 18 DT DC DT DG DG DG DG DT DC DC DT DA DG SEQRES 2 H 18 DG DA DC DC DC HET 2TM A 401 29 HET MN A 402 1 HET MN A 403 1 HET 2TM F 401 29 HET MN F 402 1 HET MN F 403 1 HETNAM 2TM 5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY) HETNAM 2 2TM PHOSPHORYL]METHYL}PHOSPHORYL]CYTIDINE HETNAM MN MANGANESE (II) ION HETSYN 2TM CMPCPP FORMUL 7 2TM 2(C10 H18 N3 O13 P3) FORMUL 8 MN 4(MN 2+) FORMUL 13 HOH *320(H2 O) HELIX 1 AA1 GLN A 12 ARG A 22 1 11 HELIX 2 AA2 PRO A 23 ARG A 26 5 4 HELIX 3 AA3 SER A 49 GLU A 54 1 6 HELIX 4 AA4 PRO A 62 CYS A 70 1 9 HELIX 5 AA5 ASP A 79 ASP A 96 1 18 HELIX 6 AA6 ASP A 120 GLY A 137 1 18 HELIX 7 AA7 ASN A 147 LYS A 159 1 13 HELIX 8 AA8 ASN A 170 GLY A 176 1 7 HELIX 9 AA9 PRO A 179 LEU A 183 5 5 HELIX 10 AB1 GLY A 187 ALA A 196 1 10 HELIX 11 AB2 THR A 201 VAL A 207 1 7 HELIX 12 AB3 ASP A 209 GLY A 218 1 10 HELIX 13 AB4 SER A 220 LYS A 230 1 11 HELIX 14 AB5 GLU A 259 GLN A 281 1 23 HELIX 15 AB6 ASP A 312 GLN A 326 1 15 HELIX 16 AB7 GLN F 12 ARG F 22 1 11 HELIX 17 AB8 PRO F 23 ARG F 26 5 4 HELIX 18 AB9 SER F 49 GLU F 54 1 6 HELIX 19 AC1 PRO F 62 CYS F 70 1 9 HELIX 20 AC2 ASP F 79 ASP F 96 1 18 HELIX 21 AC3 PRO F 121 GLY F 137 1 17 HELIX 22 AC4 ASN F 147 LYS F 159 1 13 HELIX 23 AC5 ASN F 170 GLY F 176 1 7 HELIX 24 AC6 PRO F 179 LEU F 183 5 5 HELIX 25 AC7 GLY F 187 ALA F 196 1 10 HELIX 26 AC8 THR F 201 VAL F 207 1 7 HELIX 27 AC9 ASP F 209 GLY F 218 1 10 HELIX 28 AD1 SER F 220 LYS F 230 1 11 HELIX 29 AD2 GLU F 259 GLN F 281 1 23 HELIX 30 AD3 ASP F 312 GLN F 326 1 15 SHEET 1 AA1 5 LEU A 101 TRP A 104 0 SHEET 2 AA1 5 GLU A 108 LEU A 115 -1 O TYR A 110 N GLU A 102 SHEET 3 AA1 5 THR A 2 LEU A 10 -1 N THR A 2 O LEU A 115 SHEET 4 AA1 5 CYS A 140 SER A 145 -1 O GLY A 143 N HIS A 7 SHEET 5 AA1 5 ILE A 163 VAL A 165 1 O TYR A 164 N ILE A 144 SHEET 1 AA2 3 CYS A 47 ALA A 48 0 SHEET 2 AA2 3 VAL A 30 VAL A 32 -1 N VAL A 32 O CYS A 47 SHEET 3 AA2 3 THR A 74 LEU A 76 1 O LEU A 76 N ILE A 31 SHEET 1 AA3 4 SER A 246 LEU A 257 0 SHEET 2 AA3 4 VAL A 333 LEU A 342 -1 O LEU A 340 N ARG A 247 SHEET 3 AA3 4 VAL A 285 THR A 294 -1 N ALA A 289 O ARG A 339 SHEET 4 AA3 4 THR A 299 SER A 310 -1 O LYS A 302 N VAL A 290 SHEET 1 AA4 5 LEU F 101 TRP F 104 0 SHEET 2 AA4 5 GLU F 108 LEU F 115 -1 O TYR F 110 N GLU F 102 SHEET 3 AA4 5 THR F 2 LEU F 10 -1 N LEU F 6 O LEU F 111 SHEET 4 AA4 5 CYS F 140 SER F 145 -1 O SER F 145 N VAL F 5 SHEET 5 AA4 5 ILE F 163 VAL F 165 1 O TYR F 164 N ILE F 144 SHEET 1 AA5 3 CYS F 47 ALA F 48 0 SHEET 2 AA5 3 VAL F 30 VAL F 32 -1 N VAL F 32 O CYS F 47 SHEET 3 AA5 3 THR F 74 LEU F 76 1 O THR F 74 N ILE F 31 SHEET 1 AA6 4 SER F 246 LEU F 257 0 SHEET 2 AA6 4 VAL F 333 LEU F 342 -1 O LEU F 340 N ARG F 247 SHEET 3 AA6 4 VAL F 285 THR F 294 -1 N THR F 286 O GLU F 341 SHEET 4 AA6 4 THR F 299 SER F 310 -1 O LYS F 302 N VAL F 290 LINK OD2 ASP A 9 MN MN A 402 1555 1555 1.92 LINK OD1 ASP A 9 MN MN A 403 1555 1555 2.36 LINK O LEU A 10 MN MN A 403 1555 1555 2.36 LINK OD1 ASP A 107 MN MN A 402 1555 1555 2.62 LINK OD2 ASP A 107 MN MN A 402 1555 1555 2.36 LINK OD2 ASP A 107 MN MN A 403 1555 1555 2.07 LINK OE2 GLU A 108 MN MN A 402 1555 1555 2.37 LINK O1A 2TM A 401 MN MN A 402 1555 1555 1.81 LINK O2G 2TM A 401 MN MN A 403 1555 1555 2.67 LINK O2B 2TM A 401 MN MN A 403 1555 1555 2.46 LINK OD2 ASP F 9 MN MN F 402 1555 1555 2.24 LINK OD1 ASP F 9 MN MN F 403 1555 1555 2.23 LINK O LEU F 10 MN MN F 403 1555 1555 2.52 LINK OD1 ASP F 107 MN MN F 402 1555 1555 2.51 LINK OD2 ASP F 107 MN MN F 402 1555 1555 2.75 LINK OD2 ASP F 107 MN MN F 403 1555 1555 1.98 LINK OE2 GLU F 108 MN MN F 402 1555 1555 1.95 LINK O1A 2TM F 401 MN MN F 402 1555 1555 1.73 LINK O2G 2TM F 401 MN MN F 403 1555 1555 2.77 LINK O2B 2TM F 401 MN MN F 403 1555 1555 2.40 CISPEP 1 GLU A 118 SER A 119 0 -28.19 CISPEP 2 LYS A 159 PRO A 160 0 -6.41 CISPEP 3 LYS F 159 PRO F 160 0 -2.78 SITE 1 AC1 20 ASP A 9 LEU A 10 ASP A 11 GLN A 12 SITE 2 AC1 20 PHE A 13 TYR A 14 THR A 46 TYR A 50 SITE 3 AC1 20 ARG A 53 ASP A 107 GLU A 108 LYS A 159 SITE 4 AC1 20 MN A 402 MN A 403 HOH A 515 HOH A 530 SITE 5 AC1 20 HOH A 560 DG B 840 DG B 841 DC C 873 SITE 1 AC2 5 ASP A 9 ASP A 107 GLU A 108 2TM A 401 SITE 2 AC2 5 MN A 403 SITE 1 AC3 6 ASP A 9 LEU A 10 ASP A 107 LYS A 159 SITE 2 AC3 6 2TM A 401 MN A 402 SITE 1 AC4 20 ASP F 9 LEU F 10 ASP F 11 GLN F 12 SITE 2 AC4 20 PHE F 13 TYR F 14 THR F 46 TYR F 50 SITE 3 AC4 20 ARG F 53 ASP F 107 GLU F 108 LYS F 159 SITE 4 AC4 20 MN F 402 MN F 403 HOH F 512 HOH F 550 SITE 5 AC4 20 HOH F 565 DG G 840 DG G 841 DC H 873 SITE 1 AC5 6 ASP F 9 ASP F 107 GLU F 108 2TM F 401 SITE 2 AC5 6 MN F 403 DC H 873 SITE 1 AC6 6 ASP F 9 LEU F 10 ASP F 107 LYS F 159 SITE 2 AC6 6 2TM F 401 MN F 402 CRYST1 54.670 80.240 210.770 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004745 0.00000