PDB Short entry for 6TOS HEADER MEMBRANE PROTEIN 11-DEC-19 6TOS TITLE CRYSTAL STRUCTURE OF THE OREXIN-1 RECEPTOR IN COMPLEX WITH GSK1059865 CAVEAT 6TOS PGW B 404 HAS WRONG CHIRALITY AT ATOM C05 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OREXIN RECEPTOR TYPE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OX1R,HYPOCRETIN RECEPTOR TYPE 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: GSK1059865 BOUND IN THE ORTHOSTERIC SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HCRTR1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS 7TM, GPCR, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.RAPPAS,A.ALI,K.A.BENNETT,J.D.BROWN,S.J.BUCKNELL,M.CONGREVE, AUTHOR 2 R.M.COOKE,G.CSEKE,C.DE GRAAF,A.S.DORE,J.C.ERREY,A.JAZAYERI, AUTHOR 3 F.H.MARSHALL,J.S.MASON,R.MOULD,J.C.PATEL,B.G.TEHAN,M.WEIR, AUTHOR 4 J.A.CHRISTOPHER REVDAT 5 24-JAN-24 6TOS 1 HETSYN REVDAT 4 29-JUL-20 6TOS 1 COMPND REMARK HETNAM SITE REVDAT 3 11-MAR-20 6TOS 1 JRNL REVDAT 2 29-JAN-20 6TOS 1 JRNL REVDAT 1 15-JAN-20 6TOS 0 JRNL AUTH M.RAPPAS,A.A.E.ALI,K.A.BENNETT,J.D.BROWN,S.J.BUCKNELL, JRNL AUTH 2 M.CONGREVE,R.M.COOKE,G.CSEKE,C.DE GRAAF,A.S.DORE,J.C.ERREY, JRNL AUTH 3 A.JAZAYERI,F.H.MARSHALL,J.S.MASON,R.MOULD,J.C.PATEL, JRNL AUTH 4 B.G.TEHAN,M.WEIR,J.A.CHRISTOPHER JRNL TITL COMPARISON OF OREXIN 1 AND OREXIN 2 LIGAND BINDING MODES JRNL TITL 2 USING X-RAY CRYSTALLOGRAPHY AND COMPUTATIONAL ANALYSIS. JRNL REF J.MED.CHEM. V. 63 1528 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 31860301 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01787 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 71.1 REMARK 3 NUMBER OF REFLECTIONS : 44881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2197 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 9.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2173 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 29 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 609 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54700 REMARK 3 B22 (A**2) : 0.39260 REMARK 3 B33 (A**2) : 0.15440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24930 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.222 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.179 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.232 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5688 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7718 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2048 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 831 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5688 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 5 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 710 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6421 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|*} REMARK 3 ORIGIN FOR THE GROUP (A): -27.1257 -5.5043 98.7271 REMARK 3 T TENSOR REMARK 3 T11: -0.2827 T22: -0.0591 REMARK 3 T33: -0.0811 T12: 0.0138 REMARK 3 T13: -0.0409 T23: -0.1247 REMARK 3 L TENSOR REMARK 3 L11: 0.2205 L22: 3.0856 REMARK 3 L33: 2.1676 L12: -0.3552 REMARK 3 L13: -0.5762 L23: 1.5119 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.1811 S13: -0.0131 REMARK 3 S21: 0.1811 S22: 0.334 S23: 0.5142 REMARK 3 S31: -0.0131 S32: 0.5142 S33: -0.3769 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|*} REMARK 3 ORIGIN FOR THE GROUP (A): -32.132 -28.3652 73.9179 REMARK 3 T TENSOR REMARK 3 T11: -0.1065 T22: -0.1654 REMARK 3 T33: -0.2057 T12: -0.0075 REMARK 3 T13: 0.0236 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.201 L22: 3.7177 REMARK 3 L33: 1.3089 L12: 0.0475 REMARK 3 L13: -0.2303 L23: 0.0855 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: -0.4371 S13: 0.09 REMARK 3 S21: -0.4371 S22: 0.1367 S23: 0.0849 REMARK 3 S31: 0.09 S32: 0.0849 S33: -0.091 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1292105812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98658 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44881 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 30.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 9.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TO7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRISODIUM CITRATE 50MM SODIUM REMARK 280 CHLORIDE 50MM LITHIUM SULPHATE 15-34% PEG400, PH 5.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.09500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 LEU A 189 REMARK 465 PRO A 190 REMARK 465 GLU A 191 REMARK 465 LEU A 192 REMARK 465 ALA A 193 REMARK 465 ALA A 194 REMARK 465 ARG A 195 REMARK 465 THR A 196 REMARK 465 ARG A 277 REMARK 465 GLN A 278 REMARK 465 ILE A 279 REMARK 465 PRO A 280 REMARK 465 GLY A 281 REMARK 465 THR A 282 REMARK 465 THR A 283 REMARK 465 SER A 284 REMARK 465 ALA A 285 REMARK 465 PRO A 378 REMARK 465 GLY A 379 REMARK 465 LEU A 380 REMARK 465 ALA A 381 REMARK 465 ALA A 382 REMARK 465 ALA A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 ALA B 25 REMARK 465 ALA B 26 REMARK 465 SER B 27 REMARK 465 GLU B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 PHE B 31 REMARK 465 LEU B 32 REMARK 465 ARG B 33 REMARK 465 TYR B 34 REMARK 465 LEU B 35 REMARK 465 TRP B 36 REMARK 465 ARG B 37 REMARK 465 ASP B 38 REMARK 465 PRO B 378 REMARK 465 GLY B 379 REMARK 465 LEU B 380 REMARK 465 ALA B 381 REMARK 465 ALA B 382 REMARK 465 ALA B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 41 C PRO B 42 N 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 42 C - N - CA ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 39 -65.05 -138.42 REMARK 500 ALA A 198 78.70 60.53 REMARK 500 TYR A 224 -72.20 -125.59 REMARK 500 TRP A 375 -75.90 -79.12 REMARK 500 TYR B 224 -71.14 -135.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 567 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH B 584 DISTANCE = 7.14 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 402 REMARK 610 SOG A 409 REMARK 610 SOG A 410 REMARK 610 SOG A 412 REMARK 610 SOG A 414 REMARK 610 SOG A 415 REMARK 610 SOG A 416 REMARK 610 SOG A 417 REMARK 610 SOG B 407 REMARK 610 SOG B 410 REMARK 610 SOG B 411 REMARK 610 SOG B 413 REMARK 610 SOG B 414 REMARK 610 SOG B 415 REMARK 610 SOG B 416 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 419 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD1 REMARK 620 2 TYR A 311 OH 124.2 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TO7 RELATED DB: PDB REMARK 900 RELATED ID: 6TOD RELATED DB: PDB DBREF 6TOS A 28 380 UNP O43613 OX1R_HUMAN 28 380 DBREF 6TOS B 28 380 UNP O43613 OX1R_HUMAN 28 380 SEQADV 6TOS ALA A 25 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA A 26 UNP O43613 EXPRESSION TAG SEQADV 6TOS SER A 27 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA A 46 UNP O43613 GLU 46 ENGINEERED MUTATION SEQADV 6TOS LEU A 85 UNP O43613 ILE 85 ENGINEERED MUTATION SEQADV 6TOS ALA A 95 UNP O43613 VAL 95 ENGINEERED MUTATION SEQADV 6TOS LEU A 162 UNP O43613 ARG 162 ENGINEERED MUTATION SEQADV 6TOS ALA A 194 UNP O43613 ASN 194 ENGINEERED MUTATION SEQADV 6TOS ALA A 198 UNP O43613 LEU 198 ENGINEERED MUTATION SEQADV 6TOS ALA A 211 UNP O43613 TYR 211 ENGINEERED MUTATION SEQADV 6TOS A UNP O43613 ALA 253 DELETION SEQADV 6TOS A UNP O43613 LEU 254 DELETION SEQADV 6TOS A UNP O43613 VAL 255 DELETION SEQADV 6TOS A UNP O43613 ARG 256 DELETION SEQADV 6TOS A UNP O43613 ASN 257 DELETION SEQADV 6TOS A UNP O43613 TRP 258 DELETION SEQADV 6TOS A UNP O43613 LYS 259 DELETION SEQADV 6TOS A UNP O43613 ARG 260 DELETION SEQADV 6TOS A UNP O43613 PRO 261 DELETION SEQADV 6TOS A UNP O43613 SER 262 DELETION SEQADV 6TOS A UNP O43613 ASP 263 DELETION SEQADV 6TOS A UNP O43613 GLN 264 DELETION SEQADV 6TOS A UNP O43613 LEU 265 DELETION SEQADV 6TOS A UNP O43613 GLY 266 DELETION SEQADV 6TOS A UNP O43613 ASP 267 DELETION SEQADV 6TOS A UNP O43613 LEU 268 DELETION SEQADV 6TOS A UNP O43613 GLU 269 DELETION SEQADV 6TOS A UNP O43613 GLN 270 DELETION SEQADV 6TOS A UNP O43613 GLY 271 DELETION SEQADV 6TOS A UNP O43613 LEU 272 DELETION SEQADV 6TOS A UNP O43613 SER 273 DELETION SEQADV 6TOS A UNP O43613 GLY 274 DELETION SEQADV 6TOS A UNP O43613 GLU 275 DELETION SEQADV 6TOS A UNP O43613 PRO 276 DELETION SEQADV 6TOS A UNP O43613 GLN 277 DELETION SEQADV 6TOS A UNP O43613 PRO 278 DELETION SEQADV 6TOS A UNP O43613 ARG 279 DELETION SEQADV 6TOS A UNP O43613 ALA 280 DELETION SEQADV 6TOS A UNP O43613 ARG 281 DELETION SEQADV 6TOS A UNP O43613 ALA 282 DELETION SEQADV 6TOS A UNP O43613 PHE 283 DELETION SEQADV 6TOS A UNP O43613 LEU 284 DELETION SEQADV 6TOS VAL A 304 UNP O43613 LEU 304 ENGINEERED MUTATION SEQADV 6TOS ALA A 339 UNP O43613 CYS 339 ENGINEERED MUTATION SEQADV 6TOS TRP A 375 UNP O43613 CYS 375 ENGINEERED MUTATION SEQADV 6TOS TRP A 376 UNP O43613 CYS 376 ENGINEERED MUTATION SEQADV 6TOS ALA A 381 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA A 382 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA A 383 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 384 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 385 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 386 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 387 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 388 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 389 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 390 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 391 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS A 392 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA B 25 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA B 26 UNP O43613 EXPRESSION TAG SEQADV 6TOS SER B 27 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA B 46 UNP O43613 GLU 46 ENGINEERED MUTATION SEQADV 6TOS LEU B 85 UNP O43613 ILE 85 ENGINEERED MUTATION SEQADV 6TOS ALA B 95 UNP O43613 VAL 95 ENGINEERED MUTATION SEQADV 6TOS LEU B 162 UNP O43613 ARG 162 ENGINEERED MUTATION SEQADV 6TOS ALA B 194 UNP O43613 ASN 194 ENGINEERED MUTATION SEQADV 6TOS ALA B 198 UNP O43613 LEU 198 ENGINEERED MUTATION SEQADV 6TOS ALA B 211 UNP O43613 TYR 211 ENGINEERED MUTATION SEQADV 6TOS B UNP O43613 ALA 253 DELETION SEQADV 6TOS B UNP O43613 LEU 254 DELETION SEQADV 6TOS B UNP O43613 VAL 255 DELETION SEQADV 6TOS B UNP O43613 ARG 256 DELETION SEQADV 6TOS B UNP O43613 ASN 257 DELETION SEQADV 6TOS B UNP O43613 TRP 258 DELETION SEQADV 6TOS B UNP O43613 LYS 259 DELETION SEQADV 6TOS B UNP O43613 ARG 260 DELETION SEQADV 6TOS B UNP O43613 PRO 261 DELETION SEQADV 6TOS B UNP O43613 SER 262 DELETION SEQADV 6TOS B UNP O43613 ASP 263 DELETION SEQADV 6TOS B UNP O43613 GLN 264 DELETION SEQADV 6TOS B UNP O43613 LEU 265 DELETION SEQADV 6TOS B UNP O43613 GLY 266 DELETION SEQADV 6TOS B UNP O43613 ASP 267 DELETION SEQADV 6TOS B UNP O43613 LEU 268 DELETION SEQADV 6TOS B UNP O43613 GLU 269 DELETION SEQADV 6TOS B UNP O43613 GLN 270 DELETION SEQADV 6TOS B UNP O43613 GLY 271 DELETION SEQADV 6TOS B UNP O43613 LEU 272 DELETION SEQADV 6TOS B UNP O43613 SER 273 DELETION SEQADV 6TOS B UNP O43613 GLY 274 DELETION SEQADV 6TOS B UNP O43613 GLU 275 DELETION SEQADV 6TOS B UNP O43613 PRO 276 DELETION SEQADV 6TOS B UNP O43613 GLN 277 DELETION SEQADV 6TOS B UNP O43613 PRO 278 DELETION SEQADV 6TOS B UNP O43613 ARG 279 DELETION SEQADV 6TOS B UNP O43613 ALA 280 DELETION SEQADV 6TOS B UNP O43613 ARG 281 DELETION SEQADV 6TOS B UNP O43613 ALA 282 DELETION SEQADV 6TOS B UNP O43613 PHE 283 DELETION SEQADV 6TOS B UNP O43613 LEU 284 DELETION SEQADV 6TOS VAL B 304 UNP O43613 LEU 304 ENGINEERED MUTATION SEQADV 6TOS ALA B 339 UNP O43613 CYS 339 ENGINEERED MUTATION SEQADV 6TOS TRP B 375 UNP O43613 CYS 375 ENGINEERED MUTATION SEQADV 6TOS TRP B 376 UNP O43613 CYS 376 ENGINEERED MUTATION SEQADV 6TOS ALA B 381 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA B 382 UNP O43613 EXPRESSION TAG SEQADV 6TOS ALA B 383 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 384 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 385 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 386 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 387 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 388 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 389 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 390 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 391 UNP O43613 EXPRESSION TAG SEQADV 6TOS HIS B 392 UNP O43613 EXPRESSION TAG SEQRES 1 A 336 ALA ALA SER GLU ASP GLU PHE LEU ARG TYR LEU TRP ARG SEQRES 2 A 336 ASP TYR LEU TYR PRO LYS GLN TYR ALA TRP VAL LEU ILE SEQRES 3 A 336 ALA ALA TYR VAL ALA VAL PHE VAL VAL ALA LEU VAL GLY SEQRES 4 A 336 ASN THR LEU VAL CYS LEU ALA VAL TRP ARG ASN HIS HIS SEQRES 5 A 336 MET ARG THR VAL THR ASN TYR PHE LEU VAL ASN LEU SER SEQRES 6 A 336 LEU ALA ASP VAL LEU ALA THR ALA ILE CYS LEU PRO ALA SEQRES 7 A 336 SER LEU LEU VAL ASP ILE THR GLU SER TRP LEU PHE GLY SEQRES 8 A 336 HIS ALA LEU CYS LYS VAL ILE PRO TYR LEU GLN ALA VAL SEQRES 9 A 336 SER VAL SER VAL ALA VAL LEU THR LEU SER PHE ILE ALA SEQRES 10 A 336 LEU ASP ARG TRP TYR ALA ILE CYS HIS PRO LEU LEU PHE SEQRES 11 A 336 LYS SER THR ALA ARG ARG ALA LEU GLY SER ILE LEU GLY SEQRES 12 A 336 ILE TRP ALA VAL SER LEU ALA ILE MET VAL PRO GLN ALA SEQRES 13 A 336 ALA VAL MET GLU CYS SER SER VAL LEU PRO GLU LEU ALA SEQRES 14 A 336 ALA ARG THR ARG ALA PHE SER VAL CYS ASP GLU ARG TRP SEQRES 15 A 336 ALA ASP ASP LEU ALA PRO LYS ILE TYR HIS SER CYS PHE SEQRES 16 A 336 PHE ILE VAL THR TYR LEU ALA PRO LEU GLY LEU MET ALA SEQRES 17 A 336 MET ALA TYR PHE GLN ILE PHE ARG LYS LEU TRP GLY ARG SEQRES 18 A 336 GLN ILE PRO GLY THR THR SER ALA GLU VAL LYS GLN MET SEQRES 19 A 336 ARG ALA ARG ARG LYS THR ALA LYS MET LEU MET VAL VAL SEQRES 20 A 336 VAL LEU VAL PHE ALA LEU CYS TYR LEU PRO ILE SER VAL SEQRES 21 A 336 LEU ASN VAL LEU LYS ARG VAL PHE GLY MET PHE ARG GLN SEQRES 22 A 336 ALA SER ASP ARG GLU ALA VAL TYR ALA ALA PHE THR PHE SEQRES 23 A 336 SER HIS TRP LEU VAL TYR ALA ASN SER ALA ALA ASN PRO SEQRES 24 A 336 ILE ILE TYR ASN PHE LEU SER GLY LYS PHE ARG GLU GLN SEQRES 25 A 336 PHE LYS ALA ALA PHE SER TRP TRP LEU PRO GLY LEU ALA SEQRES 26 A 336 ALA ALA HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 336 ALA ALA SER GLU ASP GLU PHE LEU ARG TYR LEU TRP ARG SEQRES 2 B 336 ASP TYR LEU TYR PRO LYS GLN TYR ALA TRP VAL LEU ILE SEQRES 3 B 336 ALA ALA TYR VAL ALA VAL PHE VAL VAL ALA LEU VAL GLY SEQRES 4 B 336 ASN THR LEU VAL CYS LEU ALA VAL TRP ARG ASN HIS HIS SEQRES 5 B 336 MET ARG THR VAL THR ASN TYR PHE LEU VAL ASN LEU SER SEQRES 6 B 336 LEU ALA ASP VAL LEU ALA THR ALA ILE CYS LEU PRO ALA SEQRES 7 B 336 SER LEU LEU VAL ASP ILE THR GLU SER TRP LEU PHE GLY SEQRES 8 B 336 HIS ALA LEU CYS LYS VAL ILE PRO TYR LEU GLN ALA VAL SEQRES 9 B 336 SER VAL SER VAL ALA VAL LEU THR LEU SER PHE ILE ALA SEQRES 10 B 336 LEU ASP ARG TRP TYR ALA ILE CYS HIS PRO LEU LEU PHE SEQRES 11 B 336 LYS SER THR ALA ARG ARG ALA LEU GLY SER ILE LEU GLY SEQRES 12 B 336 ILE TRP ALA VAL SER LEU ALA ILE MET VAL PRO GLN ALA SEQRES 13 B 336 ALA VAL MET GLU CYS SER SER VAL LEU PRO GLU LEU ALA SEQRES 14 B 336 ALA ARG THR ARG ALA PHE SER VAL CYS ASP GLU ARG TRP SEQRES 15 B 336 ALA ASP ASP LEU ALA PRO LYS ILE TYR HIS SER CYS PHE SEQRES 16 B 336 PHE ILE VAL THR TYR LEU ALA PRO LEU GLY LEU MET ALA SEQRES 17 B 336 MET ALA TYR PHE GLN ILE PHE ARG LYS LEU TRP GLY ARG SEQRES 18 B 336 GLN ILE PRO GLY THR THR SER ALA GLU VAL LYS GLN MET SEQRES 19 B 336 ARG ALA ARG ARG LYS THR ALA LYS MET LEU MET VAL VAL SEQRES 20 B 336 VAL LEU VAL PHE ALA LEU CYS TYR LEU PRO ILE SER VAL SEQRES 21 B 336 LEU ASN VAL LEU LYS ARG VAL PHE GLY MET PHE ARG GLN SEQRES 22 B 336 ALA SER ASP ARG GLU ALA VAL TYR ALA ALA PHE THR PHE SEQRES 23 B 336 SER HIS TRP LEU VAL TYR ALA ASN SER ALA ALA ASN PRO SEQRES 24 B 336 ILE ILE TYR ASN PHE LEU SER GLY LYS PHE ARG GLU GLN SEQRES 25 B 336 PHE LYS ALA ALA PHE SER TRP TRP LEU PRO GLY LEU ALA SEQRES 26 B 336 ALA ALA HIS HIS HIS HIS HIS HIS HIS HIS HIS HET NRE A 401 50 HET PG4 A 402 9 HET CIT A 403 13 HET CIT A 404 13 HET SO4 A 405 5 HET SO4 A 406 5 HET SOG A 407 20 HET SOG A 408 20 HET SOG A 409 5 HET SOG A 410 8 HET SOG A 411 20 HET SOG A 412 14 HET SOG A 413 20 HET SOG A 414 14 HET SOG A 415 8 HET SOG A 416 18 HET SOG A 417 6 HET SOG A 418 20 HET NA A 419 1 HET NRE B 401 50 HET SO4 B 402 5 HET SO4 B 403 5 HET PGW B 404 51 HET PGW B 405 51 HET SOG B 406 20 HET SOG B 407 13 HET SOG B 408 20 HET SOG B 409 20 HET SOG B 410 10 HET SOG B 411 5 HET SOG B 412 20 HET SOG B 413 6 HET SOG B 414 6 HET SOG B 415 15 HET SOG B 416 9 HET SOG B 417 20 HET SOG B 418 20 HET SOG B 419 20 HET SOG B 420 20 HETNAM NRE [(2~{S},5~{S})-2-[[(5-BROMANYLPYRIDIN-2-YL) HETNAM 2 NRE AMINO]METHYL]-5-METHYL-PIPERIDIN-1-YL]-(3-FLUORANYL-2- HETNAM 3 NRE METHOXY-PHENYL)METHANONE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CIT CITRIC ACID HETNAM SO4 SULFATE ION HETNAM SOG OCTYL 1-THIO-BETA-D-GLUCOPYRANOSIDE HETNAM NA SODIUM ION HETNAM PGW (1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 PGW PHOSPHORYL]OXY}-1-[(HEXADECANOYLOXY)METHYL]ETHYL (9Z)- HETNAM 3 PGW OCTADEC-9-ENOATE HETSYN SOG 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5- HETSYN 2 SOG TRIOL; 1-S-OCTYL-BETA-D-THIOGLUCOSIDE; OCTYL 1-THIO- HETSYN 3 SOG BETA-D-GLUCOSIDE; OCTYL 1-THIO-D-GLUCOSIDE; OCTYL 1- HETSYN 4 SOG THIO-GLUCOSIDE HETSYN PGW 1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-(1- HETSYN 2 PGW GLYCEROL)]; PHOSPHATIDYLGLYCEROL FORMUL 3 NRE 2(C20 H23 BR F N3 O2) FORMUL 4 PG4 C8 H18 O5 FORMUL 5 CIT 2(C6 H8 O7) FORMUL 7 SO4 4(O4 S 2-) FORMUL 9 SOG 27(C14 H28 O5 S) FORMUL 21 NA NA 1+ FORMUL 25 PGW 2(C40 H77 O10 P) FORMUL 42 HOH *151(H2 O) HELIX 1 AA1 SER A 27 TYR A 39 1 13 HELIX 2 AA2 TYR A 39 ASN A 74 1 36 HELIX 3 AA3 HIS A 75 ARG A 78 5 4 HELIX 4 AA4 THR A 79 GLU A 110 1 32 HELIX 5 AA5 PHE A 114 CYS A 149 1 36 HELIX 6 AA6 THR A 157 MET A 176 1 20 HELIX 7 AA7 MET A 176 VAL A 182 1 7 HELIX 8 AA8 LEU A 210 TYR A 224 1 15 HELIX 9 AA9 TYR A 224 TRP A 243 1 20 HELIX 10 AB1 VAL A 287 VAL A 323 1 37 HELIX 11 AB2 ASP A 332 SER A 362 1 31 HELIX 12 AB3 SER A 362 TRP A 376 1 15 HELIX 13 AB4 GLN B 44 ASN B 74 1 31 HELIX 14 AB5 HIS B 75 ARG B 78 5 4 HELIX 15 AB6 THR B 79 ILE B 98 1 20 HELIX 16 AB7 ILE B 98 GLU B 110 1 13 HELIX 17 AB8 PHE B 114 HIS B 150 1 37 HELIX 18 AB9 THR B 157 MET B 176 1 20 HELIX 19 AC1 MET B 176 VAL B 182 1 7 HELIX 20 AC2 LEU B 189 ARG B 195 5 7 HELIX 21 AC3 ASP B 209 TYR B 224 1 16 HELIX 22 AC4 TYR B 224 GLY B 244 1 21 HELIX 23 AC5 THR B 251 VAL B 323 1 41 HELIX 24 AC6 ASP B 332 SER B 362 1 31 HELIX 25 AC7 SER B 362 LEU B 377 1 16 SHEET 1 AA1 2 MET A 183 VAL A 188 0 SHEET 2 AA1 2 PHE A 199 GLU A 204 -1 O ASP A 203 N GLU A 184 SHEET 1 AA2 2 MET B 183 SER B 187 0 SHEET 2 AA2 2 SER B 200 GLU B 204 -1 O ASP B 203 N GLU B 184 SSBOND 1 CYS A 119 CYS A 202 1555 1555 2.06 SSBOND 2 CYS B 119 CYS B 202 1555 1555 2.06 LINK OD1 ASP A 92 NA NA A 419 1555 1555 2.42 LINK OH TYR A 311 NA NA A 419 1555 1555 2.90 CRYST1 59.692 146.190 71.508 90.00 112.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016753 0.000000 0.006915 0.00000 SCALE2 0.000000 0.006840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015129 0.00000