Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NVP entry

There are 6 chains in PDB entry 9NVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	UNK 12	MET 726
A	SER 19	MET 882
E	THR 5	MET 145
F	THR 5	MET 145
C	SER 19	MET 882
D	UNK 12	MET 726

There are168 helices in PDB entry 9NVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	32	37	Right-handed alpha
Helix 2	AA2	B	43	53	Right-handed alpha
Helix 3	AA3	B	53	64	Right-handed alpha
Helix 4	AA4	B	65	67	Right-handed 310
Helix 5	AA5	B	79	90	Right-handed alpha
Helix 6	AA6	B	129	138	Right-handed alpha
Helix 7	AA7	B	139	153	Right-handed alpha
Helix 8	AA8	B	154	159	Right-handed 310
Helix 9	AA9	B	170	178	Right-handed alpha
Helix 10	AB1	B	180	190	Right-handed alpha
Helix 11	AB2	B	228	237	Right-handed alpha
Helix 12	AB3	B	238	248	Right-handed alpha
Helix 13	AB4	B	261	270	Right-handed alpha
Helix 14	AB5	B	271	280	Right-handed alpha
Helix 15	AB6	B	297	306	Right-handed alpha
Helix 16	AB7	B	307	319	Right-handed alpha
Helix 17	AB8	B	351	359	Right-handed alpha
Helix 18	AB9	B	361	369	Right-handed alpha
Helix 19	AC1	B	370	384	Right-handed alpha
Helix 20	AC2	B	384	409	Right-handed alpha
Helix 21	AC3	B	423	456	Right-handed alpha
Helix 22	AC4	B	457	463	Right-handed alpha
Helix 23	AC5	B	465	488	Right-handed alpha
Helix 24	AC6	B	489	507	Right-handed alpha
Helix 25	AC7	B	507	515	Right-handed alpha
Helix 26	AC8	B	518	530	Right-handed alpha
Helix 27	AC9	B	531	555	Right-handed alpha
Helix 28	AD1	B	560	564	Right-handed 310
Helix 29	AD2	B	568	580	Right-handed alpha
Helix 30	AD3	B	586	592	Right-handed 310
Helix 31	AD4	B	594	609	Right-handed alpha
Helix 32	AD5	B	612	648	Right-handed alpha
Helix 33	AD6	B	652	664	Right-handed alpha
Helix 34	AD7	B	689	715	Right-handed alpha
Helix 35	AD8	B	718	726	Right-handed alpha
Helix 36	AD9	A	20	27	Right-handed alpha
Helix 37	AE1	A	33	46	Right-handed alpha
Helix 38	AE2	A	48	60	Right-handed alpha
Helix 39	AE3	A	61	63	Right-handed 310
Helix 40	AE4	A	74	84	Right-handed alpha
Helix 41	AE5	A	91	96	Right-handed alpha
Helix 42	AE6	A	104	108	Right-handed 310
Helix 43	AE7	A	114	120	Right-handed alpha
Helix 44	AE8	A	140	149	Right-handed alpha
Helix 45	AE9	A	150	163	Right-handed alpha
Helix 46	AF1	A	164	168	Right-handed 310
Helix 47	AF2	A	181	190	Right-handed alpha
Helix 48	AF3	A	191	201	Right-handed alpha
Helix 49	AF4	A	211	215	Right-handed 310
Helix 50	AF5	A	217	221	Right-handed 310
Helix 51	AF6	A	249	258	Right-handed alpha
Helix 52	AF7	A	259	270	Right-handed alpha
Helix 53	AF8	A	282	291	Right-handed alpha
Helix 54	AF9	A	293	301	Right-handed alpha
Helix 55	AG1	A	315	324	Right-handed alpha
Helix 56	AG2	A	325	337	Right-handed alpha
Helix 57	AG3	A	370	377	Right-handed alpha
Helix 58	AG4	A	380	382	Right-handed 310
Helix 59	AG5	A	383	388	Right-handed alpha
Helix 60	AG6	A	389	402	Right-handed alpha
Helix 61	AG7	A	402	427	Right-handed alpha
Helix 62	AG8	A	584	616	Right-handed alpha
Helix 63	AG9	A	616	627	Right-handed alpha
Helix 64	AH1	A	627	642	Right-handed alpha
Helix 65	AH2	A	642	649	Right-handed alpha
Helix 66	AH3	A	651	667	Right-handed alpha
Helix 67	AH4	A	669	675	Right-handed alpha
Helix 68	AH5	A	680	693	Right-handed alpha
Helix 69	AH6	A	693	718	Right-handed alpha
Helix 70	AH7	A	739	751	Right-handed alpha
Helix 71	AH8	A	758	765	Right-handed 310
Helix 72	AH9	A	768	782	Right-handed alpha
Helix 73	AI1	A	784	803	Right-handed alpha
Helix 74	AI2	A	806	822	Right-handed alpha
Helix 75	AI3	A	824	836	Right-handed alpha
Helix 76	AI4	A	853	882	Right-handed alpha
Helix 77	AI5	E	6	18	Right-handed alpha
Helix 78	AI6	E	30	40	Right-handed alpha
Helix 79	AI7	E	44	56	Right-handed alpha
Helix 80	AI8	E	64	73	Right-handed alpha
Helix 81	AI9	E	82	97	Right-handed alpha
Helix 82	AJ1	E	101	114	Right-handed alpha
Helix 83	AJ2	E	119	129	Right-handed alpha
Helix 84	AJ3	E	140	145	Right-handed 310
Helix 85	AJ4	F	6	18	Right-handed alpha
Helix 86	AJ5	F	30	40	Right-handed alpha
Helix 87	AJ6	F	44	56	Right-handed alpha
Helix 88	AJ7	F	64	73	Right-handed alpha
Helix 89	AJ8	F	82	97	Right-handed alpha
Helix 90	AJ9	F	101	114	Right-handed alpha
Helix 91	AK1	F	119	129	Right-handed alpha
Helix 92	AK2	F	140	145	Right-handed 310
Helix 93	AK3	C	20	27	Right-handed alpha
Helix 94	AK4	C	33	46	Right-handed alpha
Helix 95	AK5	C	48	60	Right-handed alpha
Helix 96	AK6	C	61	63	Right-handed 310
Helix 97	AK7	C	74	84	Right-handed alpha
Helix 98	AK8	C	91	96	Right-handed alpha
Helix 99	AK9	C	104	108	Right-handed 310
Helix 100	AL1	C	114	120	Right-handed alpha
Helix 101	AL2	C	140	149	Right-handed alpha
Helix 102	AL3	C	150	163	Right-handed alpha
Helix 103	AL4	C	164	168	Right-handed 310
Helix 104	AL5	C	181	190	Right-handed alpha
Helix 105	AL6	C	191	201	Right-handed alpha
Helix 106	AL7	C	211	215	Right-handed 310
Helix 107	AL8	C	217	221	Right-handed 310
Helix 108	AL9	C	249	258	Right-handed alpha
Helix 109	AM1	C	259	270	Right-handed alpha
Helix 110	AM2	C	282	291	Right-handed alpha
Helix 111	AM3	C	293	301	Right-handed alpha
Helix 112	AM4	C	315	324	Right-handed alpha
Helix 113	AM5	C	325	337	Right-handed alpha
Helix 114	AM6	C	370	377	Right-handed alpha
Helix 115	AM7	C	380	382	Right-handed 310
Helix 116	AM8	C	383	388	Right-handed alpha
Helix 117	AM9	C	389	402	Right-handed alpha
Helix 118	AN1	C	402	427	Right-handed alpha
Helix 119	AN2	C	584	616	Right-handed alpha
Helix 120	AN3	C	616	627	Right-handed alpha
Helix 121	AN4	C	627	642	Right-handed alpha
Helix 122	AN5	C	642	649	Right-handed alpha
Helix 123	AN6	C	651	667	Right-handed alpha
Helix 124	AN7	C	669	675	Right-handed alpha
Helix 125	AN8	C	680	693	Right-handed alpha
Helix 126	AN9	C	693	718	Right-handed alpha
Helix 127	AO1	C	739	751	Right-handed alpha
Helix 128	AO2	C	758	765	Right-handed 310
Helix 129	AO3	C	768	782	Right-handed alpha
Helix 130	AO4	C	784	803	Right-handed alpha
Helix 131	AO5	C	806	822	Right-handed alpha
Helix 132	AO6	C	824	836	Right-handed alpha
Helix 133	AO7	C	853	882	Right-handed alpha
Helix 134	AO8	D	32	37	Right-handed alpha
Helix 135	AO9	D	43	53	Right-handed alpha
Helix 136	AP1	D	53	64	Right-handed alpha
Helix 137	AP2	D	65	67	Right-handed 310
Helix 138	AP3	D	79	90	Right-handed alpha
Helix 139	AP4	D	129	138	Right-handed alpha
Helix 140	AP5	D	139	153	Right-handed alpha
Helix 141	AP6	D	154	159	Right-handed 310
Helix 142	AP7	D	170	178	Right-handed alpha
Helix 143	AP8	D	180	190	Right-handed alpha
Helix 144	AP9	D	228	237	Right-handed alpha
Helix 145	AQ1	D	238	248	Right-handed alpha
Helix 146	AQ2	D	261	270	Right-handed alpha
Helix 147	AQ3	D	271	280	Right-handed alpha
Helix 148	AQ4	D	297	306	Right-handed alpha
Helix 149	AQ5	D	307	319	Right-handed alpha
Helix 150	AQ6	D	351	359	Right-handed alpha
Helix 151	AQ7	D	361	369	Right-handed alpha
Helix 152	AQ8	D	370	384	Right-handed alpha
Helix 153	AQ9	D	384	409	Right-handed alpha
Helix 154	AR1	D	423	456	Right-handed alpha
Helix 155	AR2	D	457	463	Right-handed alpha
Helix 156	AR3	D	465	488	Right-handed alpha
Helix 157	AR4	D	489	507	Right-handed alpha
Helix 158	AR5	D	507	515	Right-handed alpha
Helix 159	AR6	D	518	530	Right-handed alpha
Helix 160	AR7	D	531	555	Right-handed alpha
Helix 161	AR8	D	560	564	Right-handed 310
Helix 162	AR9	D	568	580	Right-handed alpha
Helix 163	AS1	D	586	592	Right-handed 310
Helix 164	AS2	D	594	609	Right-handed alpha
Helix 165	AS3	D	612	648	Right-handed alpha
Helix 166	AS4	D	652	664	Right-handed alpha
Helix 167	AS5	D	689	715	Right-handed alpha
Helix 168	AS6	D	718	726	Right-handed alpha

There are 10 sheets in PDB entry 9NVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	115	116	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	325	first strand
Strand 2	B	328	334	anti-parallel
Strand 3	B	677	685	anti-parallel
Strand 4	B	665	667	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	124	127	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	233	234	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	844	850	anti-parallel
Strand 3	A	837	838	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	124	127	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	233	234	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	352	first strand
Strand 2	C	844	850	anti-parallel
Strand 3	C	837	838	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	115	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	325	first strand
Strand 2	D	328	334	anti-parallel
Strand 3	D	677	685	anti-parallel
Strand 4	D	665	667	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NVP