Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y1Q entry

There are 3 chains in PDB entry 9Y1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 46ARG 1434
B
 GLN 1SER 120
C
 UNK 1UNK 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9Y1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 63Right-handed alpha
Helix 2
AA2
A
68 110Right-handed alpha
Helix 3
AA3
A
117 167Right-handed alpha
Helix 4
AA4
A
168 173Right-handed alpha
Helix 5
AA5
A
176 188Right-handed alpha
Helix 6
AA6
A
190 197Right-handed alpha
Helix 7
AA7
A
199 220Right-handed alpha
Helix 8
AA8
A
221 226Right-handed 310
Helix 9
AA9
A
227 268Right-handed alpha
Helix 10
AB1
A
268 275Right-handed alpha
Helix 11
AB2
A
277 308Right-handed alpha
Helix 12
AB3
A
313 330Right-handed alpha
Helix 13
AB4
A
332 351Right-handed alpha
Helix 14
AB5
A
353 376Right-handed alpha
Helix 15
AB6
A
465 471Right-handed alpha
Helix 16
AB7
A
501 508Right-handed alpha
Helix 17
AB8
A
514 524Right-handed alpha
Helix 18
AB9
A
526 533Right-handed alpha
Helix 19
AC1
A
549 564Right-handed alpha
Helix 20
AC2
A
579 590Right-handed alpha
Helix 21
AC3
A
606 613Right-handed alpha
Helix 22
AC4
A
629 635Right-handed alpha
Helix 23
AC5
A
826 834Right-handed alpha
Helix 24
AC6
A
845 855Right-handed alpha
Helix 25
AC7
A
856 883Right-handed alpha
Helix 26
AC8
A
919 921Right-handed 310
Helix 27
AC9
A
922 927Right-handed alpha
Helix 28
AD1
A
930 959Right-handed alpha
Helix 29
AD2
A
960 965Right-handed alpha
Helix 30
AD3
A
968 1009Right-handed alpha
Helix 31
AD4
A
1012 1033Right-handed alpha
Helix 32
AD5
A
1102 1119Right-handed alpha
Helix 33
AD6
A
1127 1168Right-handed alpha
Helix 34
AD7
A
1249 1259Right-handed alpha
Helix 35
AD8
A
1278 1285Right-handed alpha
Helix 36
AD9
A
1299 1305Right-handed alpha
Helix 37
AE1
A
1311 1323Right-handed alpha
Helix 38
AE2
A
1324 1331Right-handed alpha
Helix 39
AE3
A
1347 1362Right-handed alpha
Helix 40
AE4
A
1377 1391Right-handed alpha
Helix 41
AE5
A
1426 1433Right-handed alpha
Helix 42
AE6
B
86 90Right-handed 310
Helix 43
AE7
C
5 17Right-handed alpha
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There are 8 sheets in PDB entry 9Y1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
481 484anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
441 442anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 571parallel
Strand 3
A
600 603parallel
Strand 4
A
453 457parallel
Strand 5
A
615 620parallel
Strand 6
A
623 628anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1230 1234first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1262 1269anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1289first strand
Strand 2
A
1366 1370parallel
Strand 3
A
1396 1401parallel
Strand 4
A
1239 1243parallel
Strand 5
A
1412 1417parallel
Strand 6
A
1420 1424anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
17 26anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
114 119parallel
Strand 3
B
91 102anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
114 119parallel
Strand 3
B
91 102anti-parallel
Strand 4
B
105 110anti-parallel
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