Analysis of interatomic Contacts of Structural Units in PDB entry:
9YWN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9YWN entry

There are 6 chains in PDB entry 9YWN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	GLU 422
B	ALA -1	GLU 422
C	ALA -1	GLU 422
D	ALA -1	GLU 422
E	ALA -1	GLU 422
F	ALA -1	GLU 422

There are 76 helices in PDB entry 9YWN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	32	Right-handed alpha
Helix 2	AA2	A	34	44	Right-handed alpha
Helix 3	AA3	A	66	78	Right-handed alpha
Helix 4	AA4	A	91	99	Right-handed 310
Helix 5	AA5	A	113	131	Right-handed alpha
Helix 6	AA6	A	166	179	Right-handed alpha
Helix 7	AA7	A	203	210	Right-handed alpha
Helix 8	AA8	A	213	217	Right-handed 310
Helix 9	AA9	A	232	235	Right-handed 310
Helix 10	AB1	A	236	247	Right-handed alpha
Helix 11	AB2	A	261	275	Right-handed alpha
Helix 12	AB3	A	303	307	Right-handed 310
Helix 13	AB4	A	316	327	Right-handed alpha
Helix 14	AB5	B	26	30	Right-handed 310
Helix 15	AB6	B	34	44	Right-handed alpha
Helix 16	AB7	B	66	78	Right-handed alpha
Helix 17	AB8	B	91	99	Right-handed 310
Helix 18	AB9	B	113	131	Right-handed alpha
Helix 19	AC1	B	166	180	Right-handed alpha
Helix 20	AC2	B	203	210	Right-handed alpha
Helix 21	AC3	B	213	217	Right-handed 310
Helix 22	AC4	B	232	235	Right-handed 310
Helix 23	AC5	B	236	247	Right-handed alpha
Helix 24	AC6	B	261	275	Right-handed alpha
Helix 25	AC7	B	303	307	Right-handed 310
Helix 26	AC8	B	316	327	Right-handed alpha
Helix 27	AC9	C	27	32	Right-handed alpha
Helix 28	AD1	C	34	44	Right-handed alpha
Helix 29	AD2	C	66	78	Right-handed alpha
Helix 30	AD3	C	91	99	Right-handed 310
Helix 31	AD4	C	113	131	Right-handed alpha
Helix 32	AD5	C	166	180	Right-handed alpha
Helix 33	AD6	C	203	210	Right-handed alpha
Helix 34	AD7	C	213	217	Right-handed 310
Helix 35	AD8	C	232	235	Right-handed 310
Helix 36	AD9	C	236	247	Right-handed alpha
Helix 37	AE1	C	261	275	Right-handed alpha
Helix 38	AE2	C	303	307	Right-handed 310
Helix 39	AE3	C	316	327	Right-handed alpha
Helix 40	AE4	D	27	32	Right-handed alpha
Helix 41	AE5	D	34	44	Right-handed alpha
Helix 42	AE6	D	66	78	Right-handed alpha
Helix 43	AE7	D	91	99	Right-handed 310
Helix 44	AE8	D	113	131	Right-handed alpha
Helix 45	AE9	D	166	179	Right-handed alpha
Helix 46	AF1	D	203	210	Right-handed alpha
Helix 47	AF2	D	213	217	Right-handed 310
Helix 48	AF3	D	232	235	Right-handed 310
Helix 49	AF4	D	236	247	Right-handed alpha
Helix 50	AF5	D	261	275	Right-handed alpha
Helix 51	AF6	D	303	307	Right-handed 310
Helix 52	AF7	D	316	327	Right-handed alpha
Helix 53	AF8	E	34	44	Right-handed alpha
Helix 54	AF9	E	66	78	Right-handed alpha
Helix 55	AG1	E	91	99	Right-handed 310
Helix 56	AG2	E	113	131	Right-handed alpha
Helix 57	AG3	E	166	179	Right-handed alpha
Helix 58	AG4	E	203	210	Right-handed alpha
Helix 59	AG5	E	232	235	Right-handed 310
Helix 60	AG6	E	236	247	Right-handed alpha
Helix 61	AG7	E	261	275	Right-handed alpha
Helix 62	AG8	E	303	307	Right-handed 310
Helix 63	AG9	E	316	327	Right-handed alpha
Helix 64	AH1	F	26	30	Right-handed 310
Helix 65	AH2	F	34	44	Right-handed alpha
Helix 66	AH3	F	66	78	Right-handed alpha
Helix 67	AH4	F	91	99	Right-handed 310
Helix 68	AH5	F	113	131	Right-handed alpha
Helix 69	AH6	F	166	180	Right-handed alpha
Helix 70	AH7	F	203	210	Right-handed alpha
Helix 71	AH8	F	213	217	Right-handed 310
Helix 72	AH9	F	232	235	Right-handed 310
Helix 73	AI1	F	236	247	Right-handed alpha
Helix 74	AI2	F	261	275	Right-handed alpha
Helix 75	AI3	F	303	307	Right-handed 310
Helix 76	AI4	F	316	327	Right-handed alpha

There are 23 sheets in PDB entry 9YWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	383	390	anti-parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	358	364	anti-parallel
Strand 5	A	345	351	anti-parallel
Strand 6	A	334	340	anti-parallel
Strand 7	A	0	14	anti-parallel
Strand 8	A	370	375	parallel
Strand 9	A	408	411	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	50	54	parallel
Strand 3	A	82	86	parallel
Strand 4	A	137	139	parallel
Strand 5	A	186	192	parallel
Strand 6	A	219	222	parallel
Strand 7	A	252	257	parallel
Strand 8	A	280	285	parallel
Strand 9	A	17	22	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	111	112	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	296	298	parallel
Strand 3	A	313	315	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	402	first strand
Strand 2	B	383	390	anti-parallel
Strand 3	B	415	422	anti-parallel
Strand 4	B	358	364	anti-parallel
Strand 5	B	345	351	anti-parallel
Strand 6	B	334	340	anti-parallel
Strand 7	B	0	14	anti-parallel
Strand 8	B	370	375	parallel
Strand 9	B	408	411	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	50	54	parallel
Strand 3	B	82	86	parallel
Strand 4	B	137	139	parallel
Strand 5	B	186	192	parallel
Strand 6	B	219	222	parallel
Strand 7	B	252	257	parallel
Strand 8	B	280	285	parallel
Strand 9	B	17	22	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	111	112	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	296	298	parallel
Strand 3	B	313	315	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	402	first strand
Strand 2	C	383	390	anti-parallel
Strand 3	C	415	422	anti-parallel
Strand 4	C	358	364	anti-parallel
Strand 5	C	345	351	anti-parallel
Strand 6	C	334	340	anti-parallel
Strand 7	C	0	14	anti-parallel
Strand 8	C	370	375	parallel
Strand 9	C	408	411	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	50	54	parallel
Strand 3	C	82	86	parallel
Strand 4	C	137	139	parallel
Strand 5	C	186	192	parallel
Strand 6	C	219	222	parallel
Strand 7	C	252	257	parallel
Strand 8	C	280	285	parallel
Strand 9	C	17	21	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	111	112	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	296	298	parallel
Strand 3	C	313	315	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	402	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	415	422	anti-parallel
Strand 4	D	358	364	anti-parallel
Strand 5	D	345	351	anti-parallel
Strand 6	D	334	340	anti-parallel
Strand 7	D	0	14	anti-parallel
Strand 8	D	370	375	parallel
Strand 9	D	408	411	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand
Strand 2	D	50	54	parallel
Strand 3	D	82	86	parallel
Strand 4	D	137	139	parallel
Strand 5	D	186	192	parallel
Strand 6	D	219	222	parallel
Strand 7	D	252	257	parallel
Strand 8	D	280	285	parallel
Strand 9	D	17	21	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	111	112	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	296	298	parallel
Strand 3	D	313	315	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	402	first strand
Strand 2	E	383	390	anti-parallel
Strand 3	E	415	422	anti-parallel
Strand 4	E	358	364	anti-parallel
Strand 5	E	345	351	anti-parallel
Strand 6	E	334	340	anti-parallel
Strand 7	E	0	14	anti-parallel
Strand 8	E	370	375	parallel
Strand 9	E	408	411	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	50	54	parallel
Strand 3	E	82	86	parallel
Strand 4	E	137	139	parallel
Strand 5	E	186	192	parallel
Strand 6	E	219	222	parallel
Strand 7	E	252	257	parallel
Strand 8	E	280	285	parallel
Strand 9	E	17	21	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	288	first strand
Strand 2	E	296	298	parallel
Strand 3	E	313	315	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	402	first strand
Strand 2	F	383	390	anti-parallel
Strand 3	F	415	422	anti-parallel
Strand 4	F	358	364	anti-parallel
Strand 5	F	345	351	anti-parallel
Strand 6	F	334	340	anti-parallel
Strand 7	F	0	14	anti-parallel
Strand 8	F	370	375	parallel
Strand 9	F	408	411	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	21	first strand
Strand 2	F	50	54	parallel
Strand 3	F	82	86	parallel
Strand 4	F	137	139	parallel
Strand 5	F	186	192	parallel
Strand 6	F	219	222	parallel
Strand 7	F	252	254	parallel
Strand 8	F	280	285	parallel
Strand 9	F	17	21	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	108	first strand
Strand 2	F	111	112	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	288	first strand
Strand 2	F	296	298	parallel
Strand 3	F	313	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9YWN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9YWN