1A85 Hydrolase Hydrolase Inhibitor date Apr 03, 1998
title Mmp8 With Malonic And Asparagine Based Inhibitor
authors H.Brandstetter, E.G.V.Roedern, F.Grams, R.A.Engh
compound source
Molecule: Mmp-8
Chain: A
Synonym: Matrix Metalloproteinase-8
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
length a length b length c angle alpha angle beta angle gamma
33.140 69.430 72.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 0DY, CA, ZN enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1A86, 966C

Primary referenceStructure of malonic acid-based inhibitors bound to human neutrophil collagenase. A new binding mode explains apparently anomalous data., Brandstetter H, Engh RA, Von Roedern EG, Moroder L, Huber R, Bode W, Grams F, Protein Sci 1998 Jun;7(6):1303-9. PMID:9655333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1a85.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1A85
  • CSU: Contacts of Structural Units for 1A85
  • Likely Quarternary Molecular Structure file(s) for 1A85
  • Retrieve 1A85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A85 from S2C, [Save to disk]
  • View 1A85 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A85
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A85, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a85a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1a85 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a85] [1a85_A]
  • SWISS-PROT database: [P22894]
  • Domain organization of [MMP8_HUMAN] by SWISSPFAM
  • Domain found in 1A85: [ZnMc ] by SMART
  • Other resources with information on 1A85
  • Community annotation for 1A85 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1A85 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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