1C7G Lyase date Feb 18, 2000
title Tyrosine Phenol-Lyase From Erwinia Herbicola
authors B.Mikami, Y.Yamamoto, T.Katayama, H.Suzuki
compound source
Molecule: Tyrosine Phenol-Lyase
Chain: A, B, C, D
Engineered: Yes
Other_details: Pyridoxal 5'-Phosphate Link To A 257, B 257, D 257
Organism_scientific: Pantoea Agglomerans Pv. Gypsophilae
Organism_taxid: 48984
Strain: Pv. Gypsophilae
Variant: Aj2985
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm101
Expression_system_variant: Tna Deficient
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc18
Other_details: Recombinant Gene
symmetry Space Group: P 21 21 2
R_factor 0.186 R_Free 0.242
length a length b length c angle alpha angle beta angle gamma
163.490 113.040 101.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand PLP enzyme Lyase E.C. BRENDA
related structures by homologous chain: 1TPL
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (1c7g.pdb1.gz) 256 Kb
  • LPC: Ligand-Protein Contacts for 1C7G
  • CSU: Contacts of Structural Units for 1C7G
  • Likely Quarternary Molecular Structure file(s) for 1C7G
  • Retrieve 1C7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C7G from S2C, [Save to disk]
  • View 1C7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C7G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1C7G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c7ga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1c7gb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1c7gc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1c7gd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1c7g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c7g_C] [1c7g_B] [1c7g_D] [1c7g] [1c7g_A]
  • SWISS-PROT database: [P31011]
  • Domain organization of [TPL_ENTAG] by SWISSPFAM
  • Other resources with information on 1C7G
  • Community annotation for 1C7G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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