1D2B Hydrolase Inhibitor date Sep 22, 1999
title The Mmp-Inhibitory, N-Terminal Domain Of Human Tissue Inhibitor Of Metalloproteinases-1 (N-Timp-1), Solution Nmr, 29 Structures
authors B.Wu, S.Arumugam, V.Semenchenko, K.Brew, S.R.Van Doren
compound source
Molecule: Tissue Inhibitor Of Metalloproteinases-1
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Extracellular Matrix
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3a
Other_details: This Is The First 126 Residues Of The Full Length Of 184 Residues Naturally Occurring In Humans. The 126 Residue Recombinant N-Terminal Domain Lacks The Natural N-Linked Glycosylation Of Asn30 And Asn78.
methodSolution NMR
related structures by homologous chain: 1UEA

Primary referenceNMR structure of tissue inhibitor of metalloproteinases-1 implicates localized induced fit in recognition of matrix metalloproteinases., Wu B, Arumugam S, Gao G, Lee GI, Semenchenko V, Huang W, Brew K, Van Doren SR, J Mol Biol 2000 Jan 14;295(2):257-68. PMID:10623524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (960 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1D2B
  • Original NMR restraints for 1D2B from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1D2B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D2B from S2C, [Save to disk]
  • View 1D2B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D2B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D2B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d2ba_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1d2b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d2b_A] [1d2b]
  • SWISS-PROT database: [P01033]
  • Domain organization of [TIMP1_HUMAN] by SWISSPFAM
  • Domain found in 1D2B: [NTR ] by SMART
  • Other resources with information on 1D2B
  • Community annotation for 1D2B at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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