1EMB Fluorescent Protein date Jan 08, 1997
title Green Fluorescent Protein (Gfp) From Aequorea Victoria, Gln 80 Replaced With Arg
authors K.Brejc, T.Sixma
compound source
Molecule: Green Fluorescent Protein
Chain: A
Synonym: Gfp
Engineered: Yes
Mutation: Yes
Other_details: Chromophore Containing Protein 65 - 67 Denoted As Cro
Organism_scientific: Aequorea Victoria
Organism_taxid: 6100
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_vector: Tu#58
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.900 63.200 68.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand CRO enzyme
related structures by homologous chain: 1F09, 1RRX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for dual excitation and photoisomerization of the Aequorea victoria green fluorescent protein., Brejc K, Sixma TK, Kitts PA, Kain SR, Tsien RY, Ormo M, Remington SJ, Proc Natl Acad Sci U S A 1997 Mar 18;94(6):2306-11. PMID:9122190
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1emb.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1EMB
  • CSU: Contacts of Structural Units for 1EMB
  • Likely Quarternary Molecular Structure file(s) for 1EMB
  • Structure Factors (90 Kb)
  • Retrieve 1EMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EMB from S2C, [Save to disk]
  • Re-refined 1emb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EMB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EMB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1emb__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1emb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1emb_A] [1emb]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 1EMB
  • Community annotation for 1EMB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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