1F5Q Transferase date Jun 15, 2000
title Crystal Structure Of Murine Gamma Herpesvirus Cyclin Complexed To Human Cyclin Dependent Kinase 2
authors G.L.Card, P.Knowles, H.Laman, N.Jones, N.Q.Mcdonald
compound source
Molecule: Cyclin Dependent Kinase 2
Chain: A, C
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9 Insect Cells
Expression_system_vector: Baculovirus

Molecule: Gamma Herpesvirus Cyclin
Chain: B, D
Engineered: Yes

Organism_scientific: Murid Herpesvirus 4
Organism_common: Murine Herpesvirus 68
Organism_taxid: 33708
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kg
symmetry Space Group: P 1 21 1
R_factor 0.234 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.590 73.450 107.670 90.00 102.18 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1H1Q, 1PXN
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceCrystal structure of a gamma-herpesvirus cyclin-cdk complex., Card GL, Knowles P, Laman H, Jones N, McDonald NQ, EMBO J 2000 Jun 15;19(12):2877-88. PMID:10856233
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (1f5q.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (1f5q.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 1F5Q
  • CSU: Contacts of Structural Units for 1F5Q
  • Likely Quarternary Molecular Structure file(s) for 1F5Q
  • Retrieve 1F5Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F5Q from S2C, [Save to disk]
  • View 1F5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F5Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F5Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f5qa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f5qb2, region B:147-252 [Jmol] [rasmolscript] [script source]
        - Domain d1f5qb1, region B:6-146 [Jmol] [rasmolscript] [script source]
        - Domain d1f5qc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1f5qd2, region D:147-252 [Jmol] [rasmolscript] [script source]
        - Domain d1f5qd1, region D:5-146 [Jmol] [rasmolscript] [script source]
  • Fold representative 1f5q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f5q_B] [1f5q_A] [1f5q_C] [1f5q] [1f5q_D]
  • SWISS-PROT database: [P24941] [P89883]
  • Domain organization of [CDK2_HUMAN] [P89883_MHV68] by SWISSPFAM
  • Domains found in 1F5Q: [CYCLIN] [S_TKc ] by SMART
  • Other resources with information on 1F5Q
  • Community annotation for 1F5Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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