1KE8 Transferase date Nov 14, 2001
title Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 4-{[(2-Oxo-1 Dihydro-3h-Indol-3-Ylidene)Methyl]Amino}-N-(1,3-Thiazol-2-Y Benzenesulfonamide
authors H.N.Bramson, J.Corona, S.T.Davis, S.H.Dickerson, M.Edelstein, S.V R.T.Gampe, A.M.Hassell, L.M.Shewchuk, L.F.Kuyper
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cdk2, P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.530 74.040 54.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand LS4 enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1B38, 1KE6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOxindole-based inhibitors of cyclin-dependent kinase 2 (CDK2): design, synthesis, enzymatic activities, and X-ray crystallographic analysis., Bramson HN, Corona J, Davis ST, Dickerson SH, Edelstein M, Frye SV, Gampe RT Jr, Harris PA, Hassell A, Holmes WD, Hunter RN, Lackey KE, Lovejoy B, Luzzio MJ, Montana V, Rocque WJ, Rusnak D, Shewchuk L, Veal JM, Walker DH, Kuyper LF, J Med Chem 2001 Dec 6;44(25):4339-58. PMID:11728181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1ke8.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1KE8
  • CSU: Contacts of Structural Units for 1KE8
  • Likely Quarternary Molecular Structure file(s) for 1KE8
  • Structure Factors (101 Kb)
  • Retrieve 1KE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KE8 from S2C, [Save to disk]
  • Re-refined 1ke8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KE8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KE8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ke8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ke8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ke8_A] [1ke8]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1KE8: [S_TKc ] by SMART
  • Other resources with information on 1KE8
  • Community annotation for 1KE8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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