1KE9 Transferase date Nov 14, 2001
title Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-({[Ami Methyl]Aminosulfonyl)Anilino]Methylene}-2-Oxo-2,3-Dihydro-1
authors H.N.Bramson, J.Corona, S.T.Davis, S.H.Dickerson, M.Edelstein, S.V R.T.Gampe, A.M.Hassell, L.M.Shewchuk, L.F.Kuyper
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cdk2, P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.450 73.900 54.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand LS5 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1GII, 1OIU
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOxindole-based inhibitors of cyclin-dependent kinase 2 (CDK2): design, synthesis, enzymatic activities, and X-ray crystallographic analysis., Bramson HN, Corona J, Davis ST, Dickerson SH, Edelstein M, Frye SV, Gampe RT Jr, Harris PA, Hassell A, Holmes WD, Hunter RN, Lackey KE, Lovejoy B, Luzzio MJ, Montana V, Rocque WJ, Rusnak D, Shewchuk L, Veal JM, Walker DH, Kuyper LF, J Med Chem 2001 Dec 6;44(25):4339-58. PMID:11728181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1ke9.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1KE9
  • CSU: Contacts of Structural Units for 1KE9
  • Likely Quarternary Molecular Structure file(s) for 1KE9
  • Retrieve 1KE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KE9 from S2C, [Save to disk]
  • View 1KE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KE9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KE9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ke9a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ke9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ke9_A] [1ke9]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1KE9: [S_TKc ] by SMART
  • Other resources with information on 1KE9
  • Community annotation for 1KE9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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