1O46 Signaling Protein date Jun 15, 2003
title Crystal Structure Of Sh2 In Complex With Ru90395.
authors G.Lange, P.Loenze, A.Liesum
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src
Chain: A
Fragment: Sh2 Domain
Synonym: P60-Src, C-Src
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Src
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.587 58.554 64.188 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 903 BindingDB enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1SHB, 1SHD
Primary referenceRequirements for specific binding of low affinity inhibitor fragments to the SH2 domain of (pp60)Src are identical to those for high affinity binding of full length inhibitors., Lange G, Lesuisse D, Deprez P, Schoot B, Loenze P, Benard D, Marquette JP, Broto P, Sarubbi E, Mandine E, J Med Chem 2003 Nov 20;46(24):5184-95. PMID:14613321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1o46.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1O46
  • CSU: Contacts of Structural Units for 1O46
  • Likely Quarternary Molecular Structure file(s) for 1O46
  • Retrieve 1O46 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O46 from S2C, [Save to disk]
  • View 1O46 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O46
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O46, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o46a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1o46 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o46_A] [1o46]
  • SWISS-PROT database: [P12931]
  • Domain organization of [SRC_HUMAN] by SWISSPFAM
  • Domain found in 1O46: [SH2 ] by SMART
  • Other resources with information on 1O46
  • Community annotation for 1O46 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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