1U4D Transferase date Jul 23, 2004
title Structure Of The Ack1 Kinase Domain Bound To Debromohymenialdisine
authors J.C.Lougheed, R.H.Chen, P.Mak, T.J.Stout
compound source
Molecule: Activated Cdc42 Kinase 1
Chain: A, B
Fragment: Kinase Domain
Synonym: Ack-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ack1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf-9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pacgp67
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.248
length a length b length c angle alpha angle beta angle gamma
81.552 42.918 85.149 90.00 112.02 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CL, DBQ enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1U46, 1U54
A, B

Primary referenceCrystal structures of the phosphorylated and unphosphorylated kinase domains of the Cdc42-associated tyrosine kinase ACK1., Lougheed JC, Chen RH, Mak P, Stout TJ, J Biol Chem 2004 Aug 11;. PMID:15308621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1u4d.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1u4d.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1U4D
  • CSU: Contacts of Structural Units for 1U4D
  • Likely Quarternary Molecular Structure file(s) for 1U4D
  • Structure Factors (479 Kb)
  • Retrieve 1U4D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U4D from S2C, [Save to disk]
  • Re-refined 1u4d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U4D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U4D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U4D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u4da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1u4db_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1u4d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u4d] [1u4d_B] [1u4d_A]
  • SWISS-PROT database: [Q07912]
  • Domain organization of [ACK1_HUMAN] by SWISSPFAM
  • Domain found in 1U4D: [TyrKc ] by SMART
  • Other resources with information on 1U4D
  • Community annotation for 1U4D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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