1UMN Peroxide Resistance date Aug 26, 2003
title Crystal Structure Of Dps-Like Peroxide Resistance Protein (D Streptococcus Suis
authors A.Kauko, S.Haataja, A.Pulliainen, J.Finne, A.C.Papageorgiou
compound source
Molecule: Dps-Like Peroxide Resistance Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Dpr
Engineered: Yes
Other_details: N-Terminus Truncated First Seven Residues Re
Organism_scientific: Streptococcus Suis
Organism_taxid: 1307
Strain: D282
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet30ek
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.224
length a length b length c angle alpha angle beta angle gamma
104.735 138.168 142.707 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CA, CL, EPE enzyme
F, A, J, K, E, B, H, C, D, I, G, L

Primary referenceCrystal structure of Streptococcus suis Dps-like peroxide resistance protein Dpr: implications for iron incorporation., Kauko A, Haataja S, Pulliainen AT, Finne J, Papageorgiou AC, J Mol Biol 2004 Apr 30;338(3):547-58. PMID:15081812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk]
  • Biological Unit Coordinates (1umn.pdb1.gz) 327 Kb
  • LPC: Ligand-Protein Contacts for 1UMN
  • CSU: Contacts of Structural Units for 1UMN
  • Likely Quarternary Molecular Structure file(s) for 1UMN
  • Structure Factors (1168 Kb)
  • Retrieve 1UMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UMN from S2C, [Save to disk]
  • Re-refined 1umn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UMN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UMN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1umna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1umnb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1umnc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1umnd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1umne_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1umnf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1umng_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1umnh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1umni_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1umnj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1umnk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1umnl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1umn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1umn_H] [1umn_D] [1umn_F] [1umn_B] [1umn_E] [1umn_C] [1umn_L] [1umn_K] [1umn] [1umn_I] [1umn_G] [1umn_J] [1umn_A]
  • SWISS-PROT database: [P0CB53]
  • Domain organization of [DPS_STRSU] by SWISSPFAM
  • Other resources with information on 1UMN
  • Community annotation for 1UMN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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