1X5Z Hydrolase date May 17, 2005
title Solution Structure Of The Fibronectin Type-III Domain Of Human Protein Tyrosine Phosphatase, Receptor Type, D Isoform 4 Variant
authors M.Yoneyama, K.Saito, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Delta
Chain: A
Fragment: Fibronectin Type-III Domain
Synonym: Protein-Tyrosine Phosphatase Delta, R-Ptp-Delta, Protein Tyrosine Phosphatase, Receptor Type, D Isoform 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprd
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050131-05
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
enzyme Hydrolase E.C. BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (575 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1X5Z
  • Retrieve 1X5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X5Z from S2C, [Save to disk]
  • View 1X5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X5Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X5Z, from MSDmotif at EBI
  • Fold representative 1x5z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x5z_A] [1x5z]
  • SWISS-PROT database: [P23468]
  • Domain organization of [PTPRD_HUMAN] by SWISSPFAM
  • Domain found in 1X5Z: [FN3 ] by SMART
  • Other resources with information on 1X5Z
  • Community annotation for 1X5Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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