1XNI Cell Cycle date Oct 05, 2004
title Tandem Tudor Domain Of 53bp1
authors Y.Huyen, O.Zgheib, R.A.Ditullio Jr., V.G.Gorgoulis, P.Zacharatos, T.J.Petty, E.A.Sheston, H.S.Mellert, E.S.Stavridi T.D.Halazonetis
compound source
Molecule: Tumor Suppressor P53-Binding Protein 1
Chain: A, B, C, D, E, F, G, H, I, J
Fragment: Residues 1485-1602
Synonym: P53-Binding Protein 1, 53bp1, Tudor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tp53bp1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.247 R_Free 0.269
length a length b length c angle alpha angle beta angle gamma
71.610 157.664 179.723 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1SSF
Primary referenceMethylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks., Huyen Y, Zgheib O, Ditullio RA Jr, Gorgoulis VG, Zacharatos P, Petty TJ, Sheston EA, Mellert HS, Stavridi ES, Halazonetis TD, Nature 2004 Nov 18;432(7015):406-11. Epub 2004 Nov 03. PMID:15525939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (1xni.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb4.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb5.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb6.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb7.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb8.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb9.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1XNI
  • Likely Quarternary Molecular Structure file(s) for 1XNI
  • Structure Factors (284 Kb)
  • Retrieve 1XNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XNI from S2C, [Save to disk]
  • Re-refined 1xni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XNI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XNI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xnia1, region A:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnia2, region A:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnib1, region B:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnib2, region B:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnic1, region C:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnic2, region C:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnid1, region D:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnid2, region D:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnie1, region E:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnie2, region E:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnif1, region F:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnif2, region F:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnig1, region G:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnig2, region G:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnih1, region H:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnih2, region H:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnii1, region I:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnii2, region I:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnij1, region J:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnij2, region J:1538-1602 [Jmol] [rasmolscript] [script source]
  • Fold representative 1xni from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xni_H] [1xni_B] [1xni_F] [1xni_I] [1xni_G] [1xni_E] [1xni_A] [1xni_D] [1xni] [1xni_C] [1xni_J]
  • SWISS-PROT database: [Q12888]
  • Domain organization of [TP53B_HUMAN] by SWISSPFAM
  • Other resources with information on 1XNI
  • Community annotation for 1XNI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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