2CXY Dna Binding Protein date Jul 01, 2005
title Crystal Structure Of The Hbaf250b At-Rich Interaction Domain (Arid)
authors A.Shimada, H.Niwa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Baf250b Subunit
Chain: A
Fragment: At-Rich Interaction Domain (Arid)
Synonym: Hbaf250b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hbaf250b
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px041105-20
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: P 65
R_factor 0.185 R_Free 0.203
length a length b length c angle alpha angle beta angle gamma
68.870 68.870 46.204 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand MSE enzyme
note 2CXY is a representative structure

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (2cxy.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2CXY
  • CSU: Contacts of Structural Units for 2CXY
  • Likely Quarternary Molecular Structure file(s) for 2CXY
  • Structure Factors (449 Kb)
  • Retrieve 2CXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CXY from S2C, [Save to disk]
  • Re-refined 2cxy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CXY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CXY, from MSDmotif at EBI
  • Fold representative 2cxy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cxy] [2cxy_A]
  • SWISS-PROT database: [Q8NFD5]
  • Domain organization of [ARI1B_HUMAN] by SWISSPFAM
  • Domains found in 2CXY: [ARID] [BRIGHT ] by SMART
  • Other resources with information on 2CXY
  • Community annotation for 2CXY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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