2D2Q Cell Adhesion date Sep 15, 2005
title Crystal Structure Of The Dimerized Radixin Ferm Domain
authors K.Kitano, F.Yusa, T.Hakoshima
compound source
Molecule: Radixin
Chain: A, B
Fragment: Ferm Domain (Residues 1-310)
Synonym: Esp10
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-3
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.218 70.218 110.810 90.00 98.97 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of dimerized radixin FERM domain suggests a novel masking motif in C-terminal residues 295-304., Kitano K, Yusa F, Hakoshima T, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt, 4):340-5. Epub 2006 Mar 25. PMID:16582480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (2d2q.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2d2q.pdb2.gz) 52 Kb
  • CSU: Contacts of Structural Units for 2D2Q
  • Likely Quarternary Molecular Structure file(s) for 2D2Q
  • Structure Factors (276 Kb)
  • Retrieve 2D2Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D2Q from S2C, [Save to disk]
  • Re-refined 2d2q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2D2Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D2Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D2Q, from MSDmotif at EBI
  • Fold representative 2d2q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d2q_B] [2d2q_A] [2d2q]
  • SWISS-PROT database: [P26043]
  • Domain organization of [RADI_MOUSE] by SWISSPFAM
  • Domains found in 2D2Q: [B41] [FERM_C ] by SMART
  • Other resources with information on 2D2Q
  • Community annotation for 2D2Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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