2D9Q Signaling Protein Cytokine date Dec 12, 2005
title Crystal Structure Of The Human Gcsf-Receptor Signaling Compl
authors T.Tamada, R.Kuroki
compound source
Molecule: Csf3
Chain: A
Fragment: Residues 1-174
Synonym: Granulocyte Colony Stimulating Factor, Gcsf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Granulocyte Colony-Stimulating Factor Receptor
Chain: B
Fragment: Ig-Crh Domain
Synonym: G-Csf-R, Cd114 Antigen, Gcsf-R
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Bacurovirus
symmetry Space Group: P 32 2 1
R_factor 0.251 R_Free 0.284
length a length b length c angle alpha angle beta angle gamma
134.777 134.777 105.468 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAG enzyme

Primary referenceHomodimeric cross-over structure of the human granulocyte colony-stimulating factor (GCSF) receptor signaling complex., Tamada T, Honjo E, Maeda Y, Okamoto T, Ishibashi M, Tokunaga M, Kuroki R, Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3135-40. Epub 2006 Feb 21. PMID:16492764
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (2d9q.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 2D9Q
  • CSU: Contacts of Structural Units for 2D9Q
  • Likely Quarternary Molecular Structure file(s) for 2D9Q
  • Structure Factors (215 Kb)
  • Retrieve 2D9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D9Q from S2C, [Save to disk]
  • Re-refined 2d9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2D9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2D9Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2D9Q, from MSDmotif at EBI
  • Fold representative 2d9q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d9q_B] [2d9q_A] [2d9q]
  • SWISS-PROT database: [Q99062] [P09919]
  • Domain organization of [CSF3R_HUMAN] [CSF3_HUMAN] by SWISSPFAM
  • Domains found in 2D9Q: [FN3] [IL6 ] by SMART
  • Other resources with information on 2D9Q
  • Community annotation for 2D9Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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