2E3V Cell Adhesion date Nov 30, 2006
title Crystal Structure Of The First Fibronectin Type III Domain O Cell Adhesion Molecule Splicing Isoform From Human Muscle C Lambda-4.4
authors A.Nishino, S.Saijo, S.Kishishita, L.Chen, Z.J.Liu, B.C.Wang, M.Shi S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Neural Cell Adhesion Molecule 1, 140 Kda Isoform
Chain: A, B, C
Fragment: First Fibronectin Type III Domain
Synonym: N-Cam 140, Ncam-140, Cd56 Antigen, Neural Cell Adh Molecule, Splicing Isoform From Human Muscle Culture, Clone 4.4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ncam1
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk050314-05
symmetry Space Group: P 31
R_factor 0.182 R_Free 0.211
length a length b length c angle alpha angle beta angle gamma
55.378 55.378 118.830 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand BTB, EDO, MSE, PEG, PGE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2e3v.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (2e3v.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (2e3v.pdb3.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2E3V
  • CSU: Contacts of Structural Units for 2E3V
  • Likely Quarternary Molecular Structure file(s) for 2E3V
  • Structure Factors (226 Kb)
  • Retrieve 2E3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E3V from S2C, [Save to disk]
  • Re-refined 2e3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E3V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E3V, from MSDmotif at EBI
  • Fold representative 2e3v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e3v_B] [2e3v_A] [2e3v] [2e3v_C]
  • SWISS-PROT database: [P13591]
  • Domain organization of [NCAM1_HUMAN] by SWISSPFAM
  • Domain found in 2E3V: [FN3 ] by SMART
  • Other resources with information on 2E3V
  • Community annotation for 2E3V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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