2G33 Virus date Feb 17, 2006
title Human Hepatitis B Virus T=4 Capsid, Strain Adyw
authors C.R.Bourne, A.Zlotnick
compound source
Molecule: Core Antigen
Chain: C, D, B, A
Fragment: Assembly Domain Residues 1 To 149
Engineered: Yes
Mutation: Yes
Organism_scientific: Hepatitis B Virus Subtype Adyw
Organism_taxid: 10419
Strain: Adyw
Gene: C
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: C 1 2 1
R_factor 0.360 R_Free 0.372
crystal
cell
length a length b length c angle alpha angle beta angle gamma
558.400 327.145 562.237 90.00 109.12 90.00
method X-Ray Diffractionresolution 3.96 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceGlobal structural changes in hepatitis B virus capsids induced by the assembly effector HAP1., Bourne CR, Finn MG, Zlotnick A, J Virol. 2006 Nov;80(22):11055-61. Epub 2006 Aug 30. PMID:16943288
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (2g33.pdb1.gz) 5139 Kb
  • CSU: Contacts of Structural Units for 2G33
  • Likely Quarternary Molecular Structure file(s) for 2G33
  • Structure Factors (12731 Kb)
  • Retrieve 2G33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G33 from S2C, [Save to disk]
  • Re-refined 2g33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G33
  • VIPERdb: visual, structural and computational analysis of 2G33
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2G33, from MSDmotif at EBI
  • Fold representative 2g33 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g33] [2g33_A] [2g33_C] [2g33_D] [2g33_B]
  • SWISS-PROT database: [P03147]
  • Domain organization of [CAPSD_HBVD1] by SWISSPFAM
  • Other resources with information on 2G33
  • Community annotation for 2G33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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