2JCN Apoptosis date Dec 27, 2006
title The Crystal Structure Of Bak1 - A Mitochondrial Apoptosis Re
authors M.Moche, P.Stenmark, C.Arrowsmith, H.Berglund, R.Busam, R.Collins A.Edwards, U.B.Ericsson, S.Flodin, A.Flores, S.Graslund, M.Hamma B.M.Hallberg, L.Holmberg Schiavone, I.Johansson, T.Karlberg, U. T.Kotenyova, S.Lundgren, M.E.Nilsson, T.Nyman, D.Ogg, C.Persson, J.Sagemark, M.Sundstrom, J.Uppenberg, M.Upsten, A.G.Thorsell, S. Berg, J.Weigelt, P.Nordlund, Structural Genomics Consortium (S
compound source
Molecule: Bcl-2 Homologous Antagonistkiller
Chain: A
Synonym: Apoptosis Regulator Bak, Bcl-2-Like 7 Protein, Bak
Engineered: Yes
Other_details: Residue 23-184 Gap At 50-54
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 65 2 2
R_factor 0.187 R_Free 0.232
length a length b length c angle alpha angle beta angle gamma
62.770 62.770 138.070 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2jcn.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2JCN
  • CSU: Contacts of Structural Units for 2JCN
  • Likely Quarternary Molecular Structure file(s) for 2JCN
  • Structure Factors (197 Kb)
  • Retrieve 2JCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JCN from S2C, [Save to disk]
  • Re-refined 2jcn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JCN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JCN, from MSDmotif at EBI
  • Fold representative 2jcn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jcn] [2jcn_A]
  • SWISS-PROT database: [Q16611]
  • Belongs to the bcl-2 (bcl-2) family according to TCDB.
  • Domain organization of [BAK_HUMAN] by SWISSPFAM
  • Domain found in 2JCN: [BCL ] by SMART
  • Other resources with information on 2JCN
  • Community annotation for 2JCN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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