2JY5 Signaling Protein date Dec 06, 2007
title Nmr Structure Of Ubiquilin 1 Uba Domain
authors D.Zhang, S.Raasi, D.Fushman
compound source
Molecule: Ubiquilin-1
Chain: A
Fragment: Uba Domain
Synonym: Protein Linking Iap With Cytoskeleton 1, Plic-1, Hplic- 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubqln1, Da41, Plic1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Vector
Expression_system_vector: Pgex
Other_details: Pgex-4t1
methodSolution NMR
Primary referenceAffinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains., Zhang D, Raasi S, Fushman D, J Mol Biol. 2008 Mar 14;377(1):162-80. Epub 2007 Dec 23. PMID:18241885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JY5
  • Retrieve 2JY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JY5 from S2C, [Save to disk]
  • View 2JY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JY5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JY5, from MSDmotif at EBI
  • Fold representative 2jy5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jy5_A] [2jy5]
  • SWISS-PROT database: [Q9UMX0]
  • Domain organization of [UBQL1_HUMAN] by SWISSPFAM
  • Domain found in 2JY5: [UBA ] by SMART
  • Other resources with information on 2JY5
  • Community annotation for 2JY5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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