3BBC Transferase date Nov 09, 2007
title Crystal Structure Of R88a Mutant Of The Nm23-H2 Transcriptio
authors A.Weichsel, W.R.Montfort
compound source
Molecule: Nucleoside Diphosphate Kinase B
Chain: A, B, C, D, E, F
Synonym: Ndk B, Ndp Kinase B, Nm23-H2, C-Myc Purine-Binding Transcription Factor Puf;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nme2, Nm23b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
71.756 104.616 118.089 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
enzyme Transferase E.C. BRENDA
F, A, D, C, E, B
  • protein histidine kinase act...

  • Primary referenceNM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1., Dexheimer TS, Carey SS, Zuohe S, Gokhale VM, Hu X, Murata LB, Maes EM, Weichsel A, Sun D, Meuillet EJ, Montfort WR, Hurley LH, Mol Cancer Ther. 2009 May 12. PMID:19435876
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (3bbc.pdb1.gz) 169 Kb
  • CSU: Contacts of Structural Units for 3BBC
  • Likely Quarternary Molecular Structure file(s) for 3BBC
  • Structure Factors (1454 Kb)
  • Retrieve 3BBC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BBC from S2C, [Save to disk]
  • Re-refined 3bbc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BBC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BBC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BBC, from MSDmotif at EBI
  • Fold representative 3bbc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bbc_D] [3bbc_A] [3bbc] [3bbc_E] [3bbc_F] [3bbc_C] [3bbc_B]
  • SWISS-PROT database: [P22392]
  • Domain organization of [NDKB_HUMAN] by SWISSPFAM
  • Domain found in 3BBC: [NDK ] by SMART
  • Other resources with information on 3BBC
  • Community annotation for 3BBC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science