3EOV Isomerase Immunosuppressant date Sep 29, 2008
title Crystal Structure Of Cyclophilin From Leishmania Donovani Li Cyclosporin A
authors V.Venugopal, D.Dasgupta, A.K.Datta, R.Banerjee
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A, B
Synonym: Ppiase, Rotamase, Cyclophilin
Engineered: Yes
Organism_scientific: Leishmania Donovani
Organism_taxid: 5661
Gene: Cyp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe32

Molecule: Cyclosporin A
Chain: C, D
Synonym: Ciclosporin, Ciclosporine
Engineered: Yes

Synthetic: Yes
Organism_scientific: Tolypocladium Inflatum
Organism_taxid: 29910
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free 0.251
length a length b length c angle alpha angle beta angle gamma
69.810 83.125 73.580 90.00 103.03 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ABA, BMT, DAL, MLE, MVA, SAR enzyme Isomerase E.C. BRENDA
A, B

Primary referenceStructure of cyclophilin from Leishmania donovani bound to cyclosporin at 2.6 A resolution: correlation between structure and thermodynamic data., Venugopal V, Datta AK, Bhattacharyya D, Dasgupta D, Banerjee R, Acta Crystallogr D Biol Crystallogr. 2009 Nov;65(Pt 11):1187-95. Epub 2009, Oct 22. PMID:19923714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3eov.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (3eov.pdb2.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 3EOV
  • CSU: Contacts of Structural Units for 3EOV
  • Likely Quarternary Molecular Structure file(s) for 3EOV
  • Structure Factors (89 Kb)
  • Retrieve 3EOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EOV from S2C, [Save to disk]
  • Re-refined 3eov structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EOV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EOV, from MSDmotif at EBI
  • Fold representative 3eov from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eov_A] [3eov_C] [3eov] [3eov_B] [3eov_D]
  • SWISS-PROT database: [Q9U9R3]
  • Domain organization of [Q9U9R3_LEIDO] by SWISSPFAM
  • Other resources with information on 3EOV
  • Community annotation for 3EOV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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