3GCZ Transferase date Feb 23, 2009
title Yokose Virus Methyltransferase In Complex With Adomet
authors M.Bollati, M.Milani, E.Mastrangelo, M.Bolognesi, Structural Prot Europe (Spine)
compound source
Molecule: Polyprotein
Chain: A
Fragment: Ns5 N-Terminal Methyltransferase Domain, Unp Resi 2784;
Synonym: Ns5 Methyltransferase
Engineered: Yes
Organism_scientific: Yokose Virus
Organism_taxid: 64294
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Plasmid
Expression_system_plasmid: Pet14b
symmetry Space Group: P 32
R_factor 0.167 R_Free 0.198
length a length b length c angle alpha angle beta angle gamma
68.912 68.912 50.806 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand GOL, SAM, SO4 enzyme Transferase E.C. BRENDA

Primary referenceCrystal structure of a methyltransferase from a no-known-vector Flavivirus., Bollati M, Milani M, Mastrangelo E, de Lambellarie X, Canard B, Bolognesi M, Biochem Biophys Res Commun. 2009 Mar 9. PMID:19275894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3gcz.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3GCZ
  • CSU: Contacts of Structural Units for 3GCZ
  • Likely Quarternary Molecular Structure file(s) for 3GCZ
  • Structure Factors (1410 Kb)
  • Retrieve 3GCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GCZ from S2C, [Save to disk]
  • Re-refined 3gcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GCZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GCZ, from MSDmotif at EBI
  • Fold representative 3gcz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gcz_A] [3gcz]
  • SWISS-PROT database: [Q7T918]
  • Domain organization of [Q7T918_9FLAV] by SWISSPFAM
  • Other resources with information on 3GCZ
  • Community annotation for 3GCZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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