3LMC Hydrolase date Jan 29, 2010
title Crystal Structure Of Zinc-Dependent Peptidase From Methanoco Labreanum (Strain Z), Northeast Structural Genomics Consort Mur16
authors A.Kuzin, S.Ashok, S.Vorobiev, J.Seetharaman, P.Patel, R.Xiao, C.Ci D.Lee, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L. J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Peptidase, Zinc-Dependent
Chain: A
Engineered: Yes
Organism_scientific: Methanocorpusculum Labreanum
Organism_taxid: 410358
Strain: Atcc 43576 Dsm 4855 Z
Gene: Mlab_0438
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector: Pet 21-23c
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
89.627 60.889 47.859 90.00 101.19 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FE, MSE, ZN enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3lmc.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3LMC
  • CSU: Contacts of Structural Units for 3LMC
  • Structure Factors (351 Kb)
  • Retrieve 3LMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LMC from S2C, [Save to disk]
  • Re-refined 3lmc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LMC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LMC, from MSDmotif at EBI
  • Fold representative 3lmc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lmc_A] [3lmc]
  • SWISS-PROT database: [A2SQK8]
  • Domain organization of [A2SQK8_METLZ] by SWISSPFAM
  • Other resources with information on 3LMC
  • Community annotation for 3LMC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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