3LMN Hydrolase date Jan 31, 2010
title Oligomeric Structure Of The Dusp Domain Of Human Usp15
authors J.R.Walker, A.Asinas, G.V.Avvakumov, D.Alenkin, J.Weigelt, C.Bountra, A.M.Edwards, C.H.Arrowsmith, A.Bochkarev, S.Dhe- Paganon
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 15
Chain: A, B
Fragment: Dusp Domain, Residues 1-133
Synonym: Ubiquitin Thioesterase 15, Ubiquitin-Specific- Processing Protease 15, Deubiquitinating Enzyme 15, Unph-2, Unph4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0529, Usp15
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-V2r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: I 41 2 2
R_factor 0.183 R_Free 0.204
length a length b length c angle alpha angle beta angle gamma
138.174 138.174 132.114 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand ACY, FMT enzyme Hydrolase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3lmn.pdb1.gz) 390 Kb
  • Biological Unit Coordinates (3lmn.pdb2.gz) 195 Kb
  • Biological Unit Coordinates (3lmn.pdb3.gz) 99 Kb
  • Biological Unit Coordinates (3lmn.pdb4.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3LMN
  • CSU: Contacts of Structural Units for 3LMN
  • Structure Factors (524 Kb)
  • Retrieve 3LMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LMN from S2C, [Save to disk]
  • Re-refined 3lmn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LMN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LMN, from MSDmotif at EBI
  • Fold representative 3lmn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lmn_B] [3lmn] [3lmn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LMN: [DUSP ] by SMART
  • Other resources with information on 3LMN
  • Community annotation for 3LMN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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