3P1M Electron Transport date Sep 30, 2010
title Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex Wi Sulfur Cluster
authors A.Chaikuad, C.Johansson, T.Krojer, W.W.Yue, C.Phillips, J.E.Bray, A.C.W.Pike, J.R.C.Muniz, M.Vollmar, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountra, K.Kavanagh, U.Oppermann, Structural Gen Consortium (Sgc)
compound source
Molecule: Adrenodoxin, Mitochondrial
Chain: A, B, C, D, E, F, G, H
Fragment: 2fe-2s Ferredoxin-Type Domain, Unp Residues 61-18
Synonym: Adrenal Ferredoxin, Ferredoxin-1, Hepatoredoxin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adx, Fdx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf
symmetry Space Group: P 32
R_factor 0.204 R_Free 0.241
length a length b length c angle alpha angle beta angle gamma
76.576 76.576 234.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.54 Å
ligand FES, FLC, GOL, K enzyme
F, A, E, B, H, C, D, G

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk]
  • Biological Unit Coordinates (3p1m.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (3p1m.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (3p1m.pdb3.gz) 87 Kb
  • Biological Unit Coordinates (3p1m.pdb4.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3P1M
  • CSU: Contacts of Structural Units for 3P1M
  • Structure Factors (785 Kb)
  • Retrieve 3P1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P1M from S2C, [Save to disk]
  • Re-refined 3p1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P1M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P1M, from MSDmotif at EBI
  • Fold representative 3p1m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p1m] [3p1m_H] [3p1m_A] [3p1m_B] [3p1m_D] [3p1m_C] [3p1m_F] [3p1m_G] [3p1m_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3P1M
  • Community annotation for 3P1M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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