3T5G Signaling Protein,Lipid Binding Protein date Jul 27, 2011
title Structure Of Fully Modified Farnesylated Rheb In Complex Wit
authors S.A.Ismail, Y.X.Chen, A.Wittinghofer
compound source
Molecule: Gtp-Binding Protein Rheb
Chain: A
Synonym: Ras Homolog Enriched In Brain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rheb, Rheb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Retinal Rod Rhodopsin-Sensitive Cgmp 3',5'-Cyclic Phosphodiesterase Subunit Delta;
Chain: B
Synonym: Gmp-Pde Delta, Protein P17
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pde6d, Pded
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.235
length a length b length c angle alpha angle beta angle gamma
47.890 57.380 134.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CMT, FAR, GDP, MG enzyme

  • GTPase inhibitor activity

  • Primary referenceArl2-GTP and Arl3-GTP regulate a GDI-like transport system for farnesylated cargo., Ismail SA, Chen YX, Rusinova A, Chandra A, Bierbaum M, Gremer L, Triola G, Waldmann H, Bastiaens PI, Wittinghofer A, Nat Chem Biol. 2011 Oct 16. doi: 10.1038/nchembio.686. PMID:22002721
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3t5g.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3T5G
  • CSU: Contacts of Structural Units for 3T5G
  • Structure Factors (289 Kb)
  • Retrieve 3T5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T5G from S2C, [Save to disk]
  • Re-refined 3t5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T5G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T5G, from MSDmotif at EBI
  • Fold representative 3t5g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t5g_B] [3t5g] [3t5g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3T5G: [RAS ] by SMART
  • Other resources with information on 3T5G
  • Community annotation for 3T5G at PDBWiki (http://pdbwiki.org)
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