3TT0 Transferase Transferase Inhibitor date Sep 13, 2011
title Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase D 3-(2,6-Dichloro-3,5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Pipe Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
authors D.E.Bussiere, J.M.Murray, W.Shu
compound source
Molecule: Basic Fibroblast Growth Factor Receptor 1
Chain: A, B
Fragment: Kinase Domain, Unp Residues 456-769
Synonym: Fgfr-1, Bfgf-R-1, Fms-Like Tyrosine Kinase 2, Flt- Oncogene C-Fgr;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr1, Fgfbr, Flg, Flt2
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Tn5
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
209.110 50.600 66.900 90.00 107.27 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 07J, GOL, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of 3-(2,6-dichloro-3,5-dimethoxy-phenyl)-1-{6-[4-(4-ethyl-piperazin-1-yl)-phenylamin o]-pyrimidin-4-yl}-1-methyl-urea (NVP-BGJ398), a potent and selective inhibitor of the fibroblast growth factor receptor family of receptor tyrosine kinase., Guagnano V, Furet P, Spanka C, Bordas V, Le Douget M, Stamm C, Brueggen J, Jensen MR, Schnell C, Schmid H, Wartmann M, Berghausen J, Drueckes P, Zimmerlin A, Bussiere D, Murray J, Graus Porta D, J Med Chem. 2011 Oct 27;54(20):7066-83. Epub 2011 Sep 21. PMID:21936542
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (3tt0.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (3tt0.pdb2.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 3TT0
  • CSU: Contacts of Structural Units for 3TT0
  • Structure Factors (136 Kb)
  • Retrieve 3TT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TT0 from S2C, [Save to disk]
  • Re-refined 3tt0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TT0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TT0, from MSDmotif at EBI
  • Fold representative 3tt0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tt0] [3tt0_A] [3tt0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TT0: [TyrKc ] by SMART
  • Other resources with information on 3TT0
  • Community annotation for 3TT0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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