4F14 Actin-Binding Protein Peptide date May 06, 2012
title Structure Of The Sh3 Domain Of Human Nebulette In Complex Wi Peptide Of Xirp2
authors F.Sauer, J.Vahokoski, M.Wilmanns
compound source
Molecule: Nebulette
Chain: A
Synonym: Actin-Binding Z-Disk Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nebl
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Xin Actin-Binding Repeat-Containing Protein 2
Chain: B
Synonym: Beta-Xin, Cardiomyopathy-Associated Protein 3, Xep
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide
symmetry Space Group: P 21 21 21
R_factor 0.144 R_Free 0.171
length a length b length c angle alpha angle beta angle gamma
35.640 38.420 43.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand ZN enzyme
Primary referenceIdentification of Xin-repeat proteins as novel ligands of the SH3 domains of nebulin and nebulette and analysis of their interaction during myofibril formation and remodeling., Eulitz S, Sauer F, Pelissier MC, Boisguerin P, Molt S, Schuld J, Orfanos Z, Kley RA, Volkmer R, Wilmanns M, Kirfel G, van der Ven PF, Furst DO, Mol Biol Cell. 2013 Oct;24(20):3215-26. doi: 10.1091/mbc.E13-04-0202. Epub 2013, Aug 28. PMID:23985323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4f14.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4F14
  • CSU: Contacts of Structural Units for 4F14
  • Structure Factors (123 Kb)
  • Retrieve 4F14 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F14 from S2C, [Save to disk]
  • Re-refined 4f14 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F14 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F14
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F14, from MSDmotif at EBI
  • Fold representative 4f14 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f14_B] [4f14_A] [4f14]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F14: [SH3 ] by SMART
  • Other resources with information on 4F14
  • Community annotation for 4F14 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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