4PD3 Contractile Protein date Apr 17, 2014
title Crystal Structure Of Rigor-Like Human Nonmuscle Myosin-2b
authors S.Munnich, S.Pathan-Chhatbar, D.J.Manstein
compound source
Molecule: Nonmuscle Myosin Heavy Chain B, Alpha-Actinin A C Protein;
Chain: A, B
Fragment: Unp P35580 Residues 1-782, Unp P05095 Residues 26
Synonym: Cellular Myosin Heavy Chain,Type B,Myosin Heavy Ch Myosin Heavy Chain,Non-Muscle Iib,Non-Muscle Myosin Heavy C Nmmhc-B,Non-Muscle Myosin Heavy Chain Iib,Nmmhc-Iib,Actin-B Protein A,F-Actin Cross-Linking Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens, Dictyostelium Discoideum
Organism_common: Human, Slime Mold
Organism_taxid: 9606, 44689
Gene: Myh10, Abpa, Actna, Ddb_g0268632
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.253 R_Free 0.288
length a length b length c angle alpha angle beta angle gamma
65.850 157.870 143.480 90.00 94.21 90.00
method X-Ray Diffractionresolution 2.84 Å
A, B

Primary referenceCrystal structure of the rigor-like human non-muscle myosin-2 motor domain., Munnich S, Pathan-Chhatbar S, Manstein DJ, FEBS Lett. 2014 Dec 20;588(24):4754-60. doi: 10.1016/j.febslet.2014.11.007. Epub , 2014 Nov 15. PMID:25451231
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk]
  • Biological Unit Coordinates (4pd3.pdb1.gz) 153 Kb
  • Biological Unit Coordinates (4pd3.pdb2.gz) 154 Kb
  • CSU: Contacts of Structural Units for 4PD3
  • Structure Factors (591 Kb)
  • Retrieve 4PD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PD3 from S2C, [Save to disk]
  • Re-refined 4pd3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PD3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PD3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PD3, from MSDmotif at EBI
  • Fold representative 4pd3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pd3_A] [4pd3] [4pd3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PD3: [MYSc] [SPEC ] by SMART
  • Other resources with information on 4PD3
  • Community annotation for 4PD3 at PDBWiki (http://pdbwiki.org)

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